FMO05340.5prime Sequence
390 bp (390 high quality bases) assembled on 2008-08-22
> FMO05340.5prime
ACTTCGTATAGCATACCTTATACGAAGTTATCAGTCGACATGAGTGGAGA
TCGCCCGAAGCGTCCCCTTTCCGCCTACATGCTGTGGCTCAACGAGACCC
GCGAACAGATCAAGAAGGATAATCCCGGCAGCAAGGTGACAGACATCGCC
AAGCGGGGCGGAGAACTCTGGCGCGGACTGAAGGATAAGACCGAGTGGGA
GCAGAAGGCCATCAAAATGAAGGAGGAGTACAACAAGGCGGTAAAGGAGT
ACGAGGCCAATGGCGGCACCGATTCGGGAGCGCCCAAGAAGCGAAAGAAG
GCGGCCGCCAAGCCAGCCAAGAAGGCCAAGAAGAAAGAGTCCTCCGAGGA
GGAGGAGGAGGACGAGAGCGAGGCAAGCTTTCTAGACCAT
FMO05340.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HmgZ-RD | 765 | CG17921-RD | 298..630 | 40..372 | 1665 | 100 | Plus |
| HmgZ-RC | 1188 | CG17921-RC | 219..551 | 40..372 | 1665 | 100 | Plus |
| HmgZ-RA | 1184 | CG17921-RA | 215..547 | 40..372 | 1665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21698125..21698304 | 372..193 | 900 | 100 | Minus |
| 2R | 25286936 | 2R | 21698387..21698540 | 193..40 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 21715495..21715614 | 70..189 | 195 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:01 has no hits.
FMO05340.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:10 Download gff for
FMO05340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HmgZ-RB | 233..572 | 32..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:10 Download gff for
FMO05340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HmgZ-RA | 286..625 | 32..372 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:51 Download gff for
FMO05340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HmgZ-RA | 208..547 | 32..372 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:51 Download gff for
FMO05340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21698125..21698304 | 193..372 | 100 | <- | Minus |
| 2R | 21698388..21698547 | 32..192 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:10 Download gff for
FMO05340.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17585630..17585809 | 193..372 | 100 | <- | Minus |
| arm_2R | 17585893..17586052 | 32..192 | 97 | | Minus |
