FMO05341.5prime Sequence
653 bp (653 high quality bases) assembled on 2008-08-22
> FMO05341.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAAAAAC
ACTTTCCAATCGGGATTCCTATCAATTCTGTACAGTATTGGCTCAAAGCC
ACTGCAGCTGTGGGATAAGAAGGTGCGCAATGGACACATCAAGCGGATCA
CCGACAACGACATACAAAGCCTCGTGTTGGAAATAGTCGGCACCAATGTC
AGCACCACGTTCATAACATGTCCGGCAGATCCGAAGAAGACGCTGGGCAT
CAAGCTGCCCTTCCTGGTGATGATCATCAAGAACATGAAGAAGTACTTCA
CCTTCGAGGTTCAGGTTCTCGATGACAAGAACGTGCGGCGAAGGTTTAGG
GCCAGTAACTACCAGTCGACAACTCGTGTCAAGCCTTTCATTTGCACCAT
GCCCATGCGATTGGACGAGGGATGGAACCAGATCCAGTTCAACCTGTCCG
ACTTCACGCGTCGCGCATACGGCACCAATTATGTGGAGACACTCCGTGTA
CAGATTCATGCAAATTGCCGCATCAGACGCGTCTACTTCTCCGATCGTCT
CTACTCGGAGGACGAGCTGCCGCCGGAGTTTAAGCTCTTCCTTCCCATTC
AGAAGCCGGTGCAGAAGTCCAATGCGATTTGTAGCGCAAGCTTTCTAGAC
CAT
FMO05341.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:51:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Bug22-RA | 943 | CG5343-RA | 201..801 | 35..635 | 2990 | 99.8 | Plus |
| CG17118-RA | 979 | CG17118-RA | 425..496 | 419..490 | 225 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:51:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10430062..10430386 | 635..311 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 10430437..10430718 | 316..35 | 1395 | 99.6 | Minus |
| 2L | 23513712 | 2L | 10730802..10730873 | 419..490 | 225 | 87.5 | Plus |
| 2L | 23513712 | 2L | 10730559..10730633 | 242..316 | 180 | 82.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:51:29 has no hits.
FMO05341.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:39 Download gff for
FMO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5343-RA | 198..807 | 30..643 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:12 Download gff for
FMO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5343-RA | 194..803 | 30..643 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:27:58 Download gff for
FMO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Bug22-RA | 198..807 | 30..643 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:27:58 Download gff for
FMO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10430056..10430382 | 315..643 | 98 | <- | Minus |
| 2L | 10430439..10430721 | 30..314 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:39 Download gff for
FMO05341.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10430056..10430382 | 315..643 | 98 | <- | Minus |
| arm_2L | 10430439..10430721 | 30..314 | 98 | | Minus |
