FMO05342.5prime Sequence
1211 bp (1016 high quality bases) assembled on 2008-08-22
> FMO05342.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATCCCCA
AACATCAAAAGTATGCCAAACGCTTAATTTTACAATAGCAAGGCGAACTG
CAGAAGCTCCCGTGAAGCTTGTATCCCATGAAGTCTCACTTTCAGACAGT
ACTACTTCTTTGGAGCTGAGCAATTGCTGCCGCTTGTGTTTGGAGGAGCC
GTATCCCAACCAAATGCTGGACATGACCGTCATCTATGACCAGGAGGCGG
CGCTGAGTTACTACGACTGCTACGAGATCTGCACCAAGGAAGACCTGCGG
CAAAATCCCAAAAACGAGCCACGAACCTTGTGCAAACGTTGTGCGGTGGA
ACTGAAATGGGCCTACGACTTCCACAAGAAAATGGCCATTGCCAATCAGC
AGTTGAGGGAGATATTTGTGGCAACCGAAGCCAACACGGAACAGGAAGAC
GACGTGGAGGATGAGGAGAATGAGGCGGATATGAATGAAGAGTTCCTGAT
GGAAGAGATTGAGGAGAAGCAGGAAACCCCTATCGACAGCTTAGAGGACA
TTGTGCCACGCAATCGGCATACGGGAAAATCCAACTGCAAGTTCTGCCAC
AAGGAGTTCAGGAACCATTCCCGCATGGCCAAGCACCAGATGATTCATTT
GGCCAATCGTCCCAACTTTCGTTGCAGCCAGTGCGACCGGGTTTACCTCA
CAAAGCAGGCGCTGAAAGTTCACGTCGATTCGAAGCACAGGCAGTCTGGA
GTCCACTGCGACACATGCGGCAAGGTTTTTGCCATTGCCAAAGCCCTGAG
ATTCATAAACGCTATCATAACAGAGACTTTCCCTATTCCTGTGATCTCTG
TGATCGTCGTTTCGCACAGCGATCCCATTTGACTGTCCACCAGCAGTTAA
GCACTCTGGATCTCGCTTCATTTGCGAGTTTCCCGGCTGCAGAAGTCCTT
TACCTCATCTTCATCTCTCAGATCACGAGTGCACGCATACGCATGCATTT
GAGTGCGCCCACTGCATCGAGCTATCAGCTCGTAACAACTACGCATGCAC
CTGACGTAGCATACATGTGTGCAATGAGGACTGAGATGCAAGGTTCACAT
CTGCCTCAGTTGAATGCAAGATTACTCGACAAGATCCACATGCAAATTAA
GCTGCTATCAGACGCTCGACATCTGCCCGCGGAGTCTATCAATCAATCTA
ATCGAATCCAT
FMO05342.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4730-RC | 1502 | CG4730-RC | 98..1123 | 40..1053 | 4850 | 98.8 | Plus |
| CG4730-RA | 1492 | CG4730-RA | 88..1113 | 40..1053 | 4850 | 98.8 | Plus |
| CG4730-RB | 1397 | CG4730-RB | 97..1018 | 144..1053 | 4330 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25677554..25678537 | 1015..40 | 4590 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:14 has no hits.
FMO05342.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:40 Download gff for
FMO05342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 81..1134 | 32..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:13 Download gff for
FMO05342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 80..1133 | 32..1071 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:57 Download gff for
FMO05342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4730-RA | 81..1134 | 32..1071 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:57 Download gff for
FMO05342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25677451..25677466 | 1038..1053 | 100 | <- | Minus |
| 3R | 25677528..25678547 | 32..1037 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:40 Download gff for
FMO05342.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21503173..21503188 | 1038..1053 | 100 | <- | Minus |
| arm_3R | 21503250..21504269 | 32..1037 | 98 | <- | Minus |
