FMO05343.5prime Sequence
592 bp (592 high quality bases) assembled on 2008-08-22
> FMO05343.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGGGACTAACAATAT
CTAGTCTTTTGACACGTTTGTTTGGAAAAAAACAAATGCGTATTCTTATG
GTTGGCTTGGATGCTGCTGGAAAAACGACTATTCTGTACAAATTAAAGCT
GGGTGAAATTGTAACCACCATACCAACCATAGGCTTCAATGTCGAGACTG
TGGAATATAAGAATATATGTTTTACCGTTTGGGATGTTGGTGGCCAAGAC
AAAATTCGCCCGTTGTGGCGACACTATTTCCAAAATACACAGGGTCTTAT
ATTTGTAGTGGATTCCAACGACCGCGATCGTATAACTGAAGCTGAAAGAG
AACTACAGAACATGCTCCAGGAGGATGAACTTAGGGACGCGGTACTTTTG
GTTTTTGCCAACAAACAGGACCTACCGAATGCAATGACAGCTGCCGAGCT
TACGGACAAGTTGCGCCTTAACCAATTAAGGAATCGCCACTGGTTTATTC
AGTCTACATGTGCTACCCAAGGGCACGGTCTTTATGAAGGACTTGATTGG
CTATCAGCTGAATTGGCTAAAAAAGCAAGCTTTCTAGACCAT
FMO05343.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arf102F-RB | 718 | CG11027-RB | 97..638 | 33..574 | 2710 | 100 | Plus |
| Arf102F-RA | 930 | CG11027-RA | 97..638 | 33..574 | 2710 | 100 | Plus |
| Arf79F-RJ | 1464 | CG8385-RJ | 405..767 | 98..460 | 525 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1124435..1124698 | 101..364 | 1320 | 100 | Plus |
| 4 | 1348131 | 4 | 1124767..1124893 | 364..490 | 635 | 100 | Plus |
| 4 | 1348131 | 4 | 1124950..1125033 | 491..574 | 420 | 100 | Plus |
| 4 | 1348131 | 4 | 1124263..1124331 | 33..101 | 345 | 100 | Plus |
| 3L | 28110227 | 3L | 22869666..22869777 | 291..180 | 305 | 84.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:24:31 has no hits.
FMO05343.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:33 Download gff for
FMO05343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf102F-RA | 97..641 | 33..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:15 Download gff for
FMO05343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf102F-RA | 90..634 | 33..578 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:11 Download gff for
FMO05343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arf102F-RA | 97..641 | 33..578 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:11 Download gff for
FMO05343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1124768..1124893 | 365..490 | 100 | -> | Plus |
| 4 | 1124950..1125036 | 491..578 | 97 | | Plus |
| 4 | 1124252..1124331 | 22..101 | 92 | -> | Plus |
| 4 | 1124436..1124698 | 102..364 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:33 Download gff for
FMO05343.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1144878..1144957 | 22..101 | 92 | -> | Plus |
| arm_4 | 1145062..1145324 | 102..364 | 100 | -> | Plus |
| arm_4 | 1145394..1145519 | 365..490 | 100 | -> | Plus |
| arm_4 | 1145576..1145662 | 491..578 | 97 | | Plus |
