FMO05344.5prime Sequence
603 bp (603 high quality bases) assembled on 2008-08-22
> FMO05344.5prime
TATAGCATACCTTATACGAAGTTATCAGTCGACATGTCTCTTGAGCGTGC
CGTTCGTGCCAAGATTGCCAGCAAGCGCAATCCCGAGATGGACAAGGAGG
CCCAGGAGTGGATCGAGGCCATCATTGCCGAGAAGTTCCCCGCCGGCCAG
TCCTACGAGGATGTGCTCAAGGACGGTCAGGTGCTGTGCAAACTGATCAA
CGTGCTGTCGCCCAATGCCGTGCCCAAGGTCAACTCCTCGGGCGGCCAGT
TCAAGTTCATGGAGAACATCAACAACTTCCAGAAGGCCCTGAAGGAGTAC
GGTGTGCCCGACATCGATGTCTTCCAGACCGTCGATCTGTACGAGAAGAA
GGATATTGCCAACGTTACCAACACCATCTTCGCTTTGGGCCGTGCCACCT
ACAAGCATGCCGACTTCAAGGGTCCCTTCCTGGGCCCCAAGCCCGCCGAT
GAGTGCAAGCGCGATTTCACCGAAGAGCAGCTGAAGGCTGGCCAGACCAT
TGTGGGTCTGCAGGCCGGTTCCAACAAGGGAGCCACCCAGGCTGGCCAGA
ACCTCGGCGCTGGCCGCAAGATCCTGCTCGGCAAGGCAAGCTTTCTAGAC
CAT
FMO05344.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:24:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mp20-RC | 693 | CG4696-RC | 72..626 | 32..586 | 2775 | 100 | Plus |
| Mp20-RA | 879 | CG4696-RA | 72..625 | 32..585 | 2770 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:24:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13246915..13247249 | 62..396 | 1675 | 100 | Plus |
| 2R | 25286936 | 2R | 13247317..13247505 | 397..585 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:24:46 has no hits.
FMO05344.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:35 Download gff for
FMO05344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 67..630 | 24..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:16 Download gff for
FMO05344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RA | 85..648 | 24..591 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:17 Download gff for
FMO05344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mp20-RC | 67..631 | 24..593 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:17 Download gff for
FMO05344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13246917..13247249 | 64..396 | 100 | -> | Plus |
| 2R | 13247317..13247510 | 397..591 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:35 Download gff for
FMO05344.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9134822..9135015 | 397..591 | 98 | | Plus |
| arm_2R | 9134422..9134754 | 64..396 | 100 | -> | Plus |
