FMO05345.5prime Sequence
1131 bp (983 high quality bases) assembled on 2008-08-22
> FMO05345.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAAGATCGG
AATTAACGGATTTGGCCGCATCGGCCGCTTGGTGCTCCGCGCCGCCATCG
ATAAGGGCGCCTCCGTGGTGGCCGTCAACGATCCCTTCATCGATGTCAAC
TACATGGTTTACCTGTTTAAATTCGACTCGACTCACGGTCGTTTCAAGGG
CACCGTTGCGGCTGAGGGCGGATTCCTGGTGGTGAACGGCCAAAAGATCA
CCGTGTTCAGCGAGCGCGACCCGGCCAACATCAACTGGGCCAGTGCTGGA
ACCGAGTATGTGGTGGAGTCCACCGGAGTGTTCACCACCATTGACAAGGC
GTCCACCCACTTGAAGGGCGGCGCCAAGAAGGTCATCATCTCGGCCCCAT
CCGCCGATGCGCCCATGTTCGTGTGCGGCGTTAACCTGGACGCCTACAGC
CCCGACATGAAGGTGGTCTCCAACGCCTCGTGCACCACCAACTGCCTGGC
TCCCCTGGCCAAGGTCATCAATGACAACTTCGAGATCGTCGAGGGTCTGA
TGACCACCGTGCACGCCACCACTGCCACCCAGAAGACCGTCGACGGTCCC
TCTGGCAAACTGTGGCGCGATGGACGTGGCGCCGCCCAGAACATCATCCC
GGCCGCCACCGGAGCCGCCAAGGCTGTGGGCAAGGTCATCCCCGCCCTGA
ACGGCAAGCTGACCGGCATGGCTTTCCGCGTGCCCACGCCCAATGTCTCC
GTTGTGGATCTTACCGTCCGCTTGGGCAAGGGAGCCACCTATGACGAAAT
CAAAGCTATGTCGAGGAGGCCTCCAAGGGACCCCTGAAGGAATCCTGGGC
TACACCGATGAGGAGGTGGTCTCCACCGACTTCTTCAGCGACACCCATTC
GTCTGTGTTCGACGCCACGCTGGCATTTCGCTGAGCGATAGTTCGTCAAG
CTAATCTCGTGGTACGACTACGAGTTCGGTTACTCCACCGCGTCATCGAC
TGATCAAGTATATGCAGAGCAGGACGCCAGCTTTTCTAGACATTCGGTTG
GGCGCGCGGACCAAGGTAGGTGTCATATCATATCAAAATCATATCATATC
AAACTAGCCTAAGGAATCTGGTCTGAACTAG
FMO05345.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:45:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gapdh1-RB | 1330 | CG12055-RB | 110..1101 | 36..1021 | 4705 | 98.7 | Plus |
| Gapdh1-RA | 1480 | CG12055-RA | 260..1251 | 36..1021 | 4705 | 98.7 | Plus |
| Gapdh2-RC | 1377 | CG8893-RC | 51..1042 | 36..1021 | 3040 | 87.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:45:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7792130..7793121 | 1021..36 | 4555 | 98.7 | Minus |
| X | 23542271 | X | 15868335..15869326 | 36..1021 | 2890 | 87.5 | Plus |
| 2R | 25286936 | 2R | 16959364..16959756 | 765..373 | 405 | 73.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:45:58 has no hits.
FMO05345.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:47 Download gff for
FMO05345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gapdh1-RA | 255..1256 | 28..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:17 Download gff for
FMO05345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gapdh1-RB | 57..1058 | 28..1025 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:44 Download gff for
FMO05345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gapdh1-RA | 255..1256 | 28..1025 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:44 Download gff for
FMO05345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7792130..7793126 | 28..1021 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:47 Download gff for
FMO05345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3679635..3680631 | 28..1021 | 98 | | Minus |
