FMO05346.5prime Sequence
540 bp (540 high quality bases) assembled on 2008-08-22
> FMO05346.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGGTTAAGTG
CCTGATCGTCTGTCTCGCTTTGGGGCTATTAATGCTGGCCACGCCCGTTT
GCGAAGCGCGCCGAGGGCGTGGACGTGGACGAACCAAGTCCAGGGTGCAG
ATCGGATTGCCAATTACCGGAAAATATCGCGATCCGGAGTCCGATCAGTA
CTACAATAATAATAATGGCGCCAAAATCCTACAAGCCTCGCACTTCGATC
TTGAGTACGTTCTGGGCCACAAGATCGCCTTTTTGTGCGTGGCCAAGGGC
AATCCCCGACCCCATATCACCTGGTACAAGGACGGAGCGGAGATCTATCA
GCACCTCTATATGCACGTACACGAATGGCGCATCGGCGACGACAAGGTCA
AGTCGAAGATCGAAATTGACCCTGCCACACAGATGGACGCTGGACTCTAC
GAATGCACCGCCGACAACATGTACTCCATCGATCGGCGCAGTTTTAAGAC
GGATTTCTCCATTGCCTTCGACGCAAGCTTTCTAGACCAT
FMO05346.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:37:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14141-RA | 755 | CG14141-RA | 112..598 | 36..522 | 2435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:37:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11201696..11202001 | 217..522 | 1530 | 100 | Plus |
| 3L | 28110227 | 3L | 11201462..11201643 | 36..217 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:37:36 has no hits.
FMO05346.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:00 Download gff for
FMO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..598 | 30..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:02 Download gff for
FMO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 152..643 | 30..522 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:36 Download gff for
FMO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14141-RA | 107..598 | 30..522 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:36 Download gff for
FMO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11201459..11201642 | 24..216 | 95 | -> | Plus |
| 3L | 11201696..11202001 | 217..522 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:00 Download gff for
FMO05346.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11194559..11194742 | 24..216 | 95 | -> | Plus |
| arm_3L | 11194796..11195101 | 217..522 | 100 | | Plus |
