FMO05348.5prime Sequence
1222 bp (1049 high quality bases) assembled on 2008-08-22
> FMO05348.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTGCCTCGCGA
TCACGGCGCAACAATGCCGGCAACAAAATAGCTCATTTGCTCAATGAGGA
AGAGGAGGACGACTTTTACAAAACGTCCTATGGTGGATTTCAGGAAGACG
AAGAGGATAAGGAATACGAGCAAAAAGACGAAGAGGAAGATGTGGTTGAC
TCCGACTTCAGTATCGATGAGAACGACGAGCCCGTTTCGGATCAGGAAGA
GGCGCCCGAGAAAAAGCGGAAACGCGGTGTCGTTAACACAAAGGCTTATA
AGGAAACCAAGCCTGCAGTCAAAAAGGAAACAAAGGCAACGCCGGCCCTG
CACAAGAAACGACCTGGTGGTGGGGTAACGAAACGGCGGCCACGTCCACG
CTTCACGGTCCTCGATTCCGGCCGCAAATCCATACGCACTTCCACGGCCA
TCAAGACACAGGCTACCAAAATACGCCTCAAAGAGTTGGACGATGCCCGC
AAGCGCAAAAAGAAGAAGGTGCGCGTGGAGGACTACATGCCCACGCAGGA
GGAGCTGCTGGAGGAGGCCAAAATAACCGAGGAAGAAAACACTAAATCTT
TGGAGAAATTCCAGAAAATGGAGCTGGAGAAGAAGAAATCACGTCCCACC
AAGCGCACGTTCTCCGGACCCACGATACGCTACCACTCACTAACCATGCC
AGCGATGCGAAAGCCCACTCGCGGAGCAAACCCTGCGGTCGATTCAAAGG
ATCTTGCTGGGAAGTGCGAACGCACATTCGTTACAATCGAGAACGATTTC
AATGACAAGGTGTTTCAAAGCCTCTTCCGCCACAGGCGCCTCCCAAAGCC
AGCAATGGCATCTGTCCAATCACCAGGCTGCCAGCCCGTTACTTTGACCC
GATCACACAGCAGCCATACTACAGCATCCAGGCCTTCAAATTCTGCGCGA
GCCTACTACATGCAGCTGAACAGCAAGCGCGGCAGCGAGCAACCCGAACT
GTCAAATGCTGAATGCGCAGCTGTCAAGAGATCGTCTGAAGCTTCGCAGC
TGCAGCAAACGAGATACCCAGCTTTCAGACCATTCGTTGGCCGCGTCCAG
GTAAGGGTCTATCAAATCATATCTAATCATATCAAACTTAGCTTAGGAAT
CTGCTGACTTGCCTTGAATCCACAATAACGCCCTGCGCGCATCCAGGAGC
TCCTCGTTAACAATCTCCGAGA
FMO05348.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| YL-1-RB | 1456 | CG4621-RB | 112..1152 | 36..1059 | 4750 | 98.2 | Plus |
| YL-1-RA | 1233 | CG4621-RA | 112..1152 | 36..1059 | 4750 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10971316..10971720 | 603..1001 | 1745 | 98.3 | Plus |
| 2L | 23513712 | 2L | 10970955..10971257 | 301..603 | 1515 | 100 | Plus |
| 2L | 23513712 | 2L | 10970748..10970881 | 170..303 | 670 | 100 | Plus |
| 2L | 23513712 | 2L | 10970554..10970688 | 36..170 | 660 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:40 has no hits.
FMO05348.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:37 Download gff for
FMO05348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| YL-1-RA | 112..1105 | 36..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:18 Download gff for
FMO05348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| YL-1-RA | 100..1093 | 36..1019 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:36 Download gff for
FMO05348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| YL-1-RA | 112..1105 | 36..1019 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:36 Download gff for
FMO05348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10970554..10970687 | 36..169 | 99 | -> | Plus |
| 2L | 10970748..10970880 | 170..302 | 100 | -> | Plus |
| 2L | 10970957..10971257 | 303..603 | 100 | -> | Plus |
| 2L | 10971317..10971777 | 604..1049 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:37 Download gff for
FMO05348.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10970554..10970687 | 36..169 | 99 | -> | Plus |
| arm_2L | 10970748..10970880 | 170..302 | 100 | -> | Plus |
| arm_2L | 10970957..10971257 | 303..603 | 100 | -> | Plus |
| arm_2L | 10971317..10971777 | 604..1049 | 96 | -> | Plus |
