FMO05349.5prime Sequence
1189 bp (988 high quality bases) assembled on 2008-08-22
> FMO05349.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCGAGACTCA
CCGAGGAAATGGTGATAGCGCGGGCCAAGCAATCCGATTTGTCCCTGATC
AAAAAGCTAAATTGCTGGGGCAGTGATCTCAGCGATGTGTCCATCATCAA
GCGAATGCGTGGAGTGGAAGTTCTGGCTCTTAGTGTCAACAAGATCAGCA
CGCTGTCGACCTTCGAGGATTGCACCAAACTGCAGGAGCTATATTTGCGC
AAGAACAGCATCTCTGACATCAACGAGATCGCCTACCTACAAAATCTTCC
GAGTCTCAGGAATCTCTGGCTGGAGGAAAATCCCTGCTGCGAACGAGCGG
GTCCCAACTATCGTTCGATCGTATTACGCGCCCTGCCGAACCTCAAGAAA
CTCGACAATGTTGAGGTCACACAGCAGGAGGTGGAGGATGCGCTGCGTGG
AGGCGGAGTCGCCGCACCCGAGGACGAGGTCTACGAGGATGCATACCAGC
AACAGCAGCAGTCGAGGCGATCATCGCCGCAGCAGATACTGCAGCAGCAG
CAACACAGCTACCCGCAACACTCGCCGCCGCCGCAGCAGCAATATCAGCA
GCAGCAACAGCAGCAGCAGCAGCAGCAGCGCGGCTGCACCACTCCCACGA
AAGAGGAACCCGTGCATCCGCCATCGCCCATGTATAACACCATAACCAAA
GAGCAGCGCACCTCCTACCACCAGTACGATCGCTCGCCGGGATCCGACCA
GGAGAGTAGTCCGCACACGTACAGGGAGGTGCGGCCCACGCCGTTCCCGC
CCAGCATTTCTGCGCACTCGATGAACGATACTACCAGTCGGACAGACCCG
CCTACCCGGCGCACTACCGCCACAGCCAGACGGACCTACGAGTGGGAGGA
GCACCAGCAGGTGCCCCAGTGCACCACAATCCCTATGCCAGCCAGAGCAG
TGCACAGCGCAGCGACGCAGCGCAGTCGGAGATGACGCCTATCGTACGCA
TGCCGAGACGCGCGATGGATCGGAGACGTCAAGGCAGCGACCGAGAGATT
ATGATGGACCTCGTCATGTCGCCTCGGGATGATTCCAACCCGCTACATGC
CAGGCATAATGATCAAATTCCTTCGCCCGCCTGTTGAGTAGACTCCGATT
GGATTCGATCCTTGCGCTCCATGAGACTGGTGCACGAGA
FMO05349.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14995-RI | 3067 | CG14995-RI | 1142..2111 | 38..996 | 4555 | 98.7 | Plus |
| CG14995-RC | 3043 | CG14995-RC | 1142..2111 | 38..996 | 4555 | 98.7 | Plus |
| CG14995-RG | 3229 | CG14995-RG | 1636..2256 | 38..658 | 3105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4097506..4097804 | 656..358 | 1495 | 100 | Minus |
| 3L | 28110227 | 3L | 4098026..4098201 | 357..182 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 4095751..4095872 | 946..828 | 480 | 96.7 | Minus |
| 3L | 28110227 | 3L | 4095973..4096067 | 825..731 | 475 | 100 | Minus |
| 3L | 28110227 | 3L | 4101476..4101556 | 118..38 | 405 | 100 | Minus |
| 3L | 28110227 | 3L | 4096904..4096980 | 730..654 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 4100780..4100846 | 183..117 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 18:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6717..6865 | 480..628 | 303 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6946 | 495..673 | 273 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2338..2469 | 495..629 | 272 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..6938 | 495..629 | 269 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2442 | 495..629 | 242 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2514 | 495..629 | 230 | 67.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2359..2530 | 495..650 | 211 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2815..2965 | 495..641 | 204 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2763..2889 | 494..626 | 199 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6837..7018 | 495..673 | 137 | 57.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1074..1149 | 495..570 | 136 | 67.5 | Plus |
FMO05349.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:48 Download gff for
FMO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RC | 1136..2111 | 30..996 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:23 Download gff for
FMO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RC | 1136..2111 | 30..996 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:57 Download gff for
FMO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14995-RC | 1136..2111 | 30..996 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:57 Download gff for
FMO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4095694..4095874 | 827..996 | 93 | <- | Minus |
| 3L | 4095972..4096067 | 731..826 | 98 | <- | Minus |
| 3L | 4096904..4096978 | 656..730 | 100 | <- | Minus |
| 3L | 4097507..4097804 | 358..655 | 100 | <- | Minus |
| 3L | 4098026..4098199 | 184..357 | 100 | <- | Minus |
| 3L | 4100780..4100845 | 118..183 | 100 | <- | Minus |
| 3L | 4101477..4101560 | 30..117 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:48 Download gff for
FMO05349.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4095694..4095874 | 827..996 | 93 | <- | Minus |
| arm_3L | 4095972..4096067 | 731..826 | 98 | <- | Minus |
| arm_3L | 4096904..4096978 | 656..730 | 100 | <- | Minus |
| arm_3L | 4097507..4097804 | 358..655 | 100 | <- | Minus |
| arm_3L | 4098026..4098199 | 184..357 | 100 | <- | Minus |
| arm_3L | 4100780..4100845 | 118..183 | 100 | <- | Minus |
| arm_3L | 4101477..4101560 | 30..117 | 95 | | Minus |
