FMO05350.5prime Sequence
1198 bp (1028 high quality bases) assembled on 2008-08-22
> FMO05350.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGATTTGTCGCCT
TTGCCTGCGATGTCTTAGTCCCGGAAGCGCTGTCTTCCTCTTTGAGACGG
ACGATACGCTTGCGGAGACGCGCCTGGTCAAGATGATTGCGAAGTTTCTG
CAGCTGGAGATCCTACCAGACGACGGCATCTCGACCAGCGTCTGTACCGA
GTGCTGTGAGCATCTGGAGGACTTCAATGGCTTCTGGCAGCTGGTGGAGC
AGAAGCAGTGCTCACTCAAGAAGGAGTTCCTTACCGTGGACGTCGACTGT
GCGGCCATGAAGTGGACGGGCGGTGTGGACGTGGACGTCAACATCGACGA
ACTGCCGCTGGCGGCTGGCGACATGGACGAGAAACCGTTGGACCTGCACA
ACCTTAGTCTGCTGGGAAGCGTGCTGGACGTGAATGTGGACAGTGTGGAA
GTCAGGGAACCGATCAAGGAGCAGCTGCCCTGCGAGGAGGAGGAGGACGA
GAAGCCCTGCCTGCAAGCTAGTGATAGCGAACCGGAGGTGACCGAGGGGC
AGCCGGAATCTGAATCTGACTCCTCAGATGATGAACCCCTGGTCCGTCTG
AAATCGAAAATGAAGCCCAAGCGCAAAACCTCGGCACGTTCCTCCAAGGA
TCAGGGTCCGATATCGCTGCAGCAGGAGCTTGCAGATCTGCTCGACGATG
GTGGCAAGCGTCGGCGCACGAAGGCACCTGACCAGCGAACAACCACCGAG
TCGCAGAGTCCGAGCTACAGGCCGTTCTCGAGCGCAAGCCCAAGGGCTGC
TCCCGTGCTCAGCTGGCCAGAGCTACGAGAAGGCCATTGCTAGCTACATG
AGTGCAGCTGCGACCTGTGCGAATTTAGTGCTCCCTACCTATCCGAATTG
AGACTCACTTCTGAGGTGCACCAGCGCGAGTACTACATCAGTGCTGCGCA
AGTCTTACACGCGCTTCAGCTGATGACACATCGCAACATATCACCCCAGC
TATTTACTGCACATTTGCAGAGTCGCTCACTCGCAGACTACTGCCCTCTT
CGGACGGTGCCAACAGGTGCTCATCGCAGGGCTCAGTCCTGCCCAGGCAC
GACTCGAGCGAGGCCATGCATCCTGCAGCCGAACGTACTGGAACCTGAAT
CGTCAAGCTGCAGGTACGCGTCAGACCTCATCACTCGAACCGTATCGT
FMO05350.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2889-RB | 2098 | CG2889-RB | 299..1332 | 33..1042 | 4535 | 97.4 | Plus |
| CG2889-RA | 2173 | CG2889-RA | 374..1407 | 33..1042 | 4535 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10475200..10475622 | 158..580 | 2115 | 100 | Plus |
| X | 23542271 | X | 10475680..10476046 | 580..940 | 1525 | 97.5 | Plus |
| X | 23542271 | X | 10475014..10475140 | 33..159 | 620 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:00:56 has no hits.
FMO05350.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:29 Download gff for
FMO05350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..1337 | 24..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:25 Download gff for
FMO05350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..1337 | 24..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:47 Download gff for
FMO05350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2889-RA | 367..1337 | 24..982 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:47 Download gff for
FMO05350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10475000..10475140 | 15..159 | 92 | -> | Plus |
| X | 10475202..10475622 | 160..580 | 100 | -> | Plus |
| X | 10475681..10476096 | 581..982 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:29 Download gff for
FMO05350.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10369033..10369173 | 15..159 | 92 | -> | Plus |
| arm_X | 10369235..10369655 | 160..580 | 100 | -> | Plus |
| arm_X | 10369714..10370129 | 581..982 | 96 | == | Plus |
