FMO05351.5prime Sequence
869 bp (869 high quality bases) assembled on 2008-08-22
> FMO05351.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTTCGGCG
TTAATAAAATGTTTAAATTTGGCAAAAACTGTGGGAAATGCGACAGTCAG
GAGCTTTTTGGCAGCTCCCAAGCAGCCATGGCAGTCGTGCAGTGCGGCTG
CCCTGCAAACGCCGCATGTTCAAATGCCGATGCAAATGCACACTTCCGCT
GTTCGCCGGGATCTTATGGAGTTCTTCGACGACAAGAAGAACTGGAGCGA
GAATGAGGTGAAGGTGGGCCGCGCCTGGCGGACGGAGGAGCTGCGTATCA
AGTCCAACAAGGAGCTGCACCAGCTGTGGTTCGTGCTCCTCAAGGAGCGC
AACATGCTGCTGACCATGGAGCACGAGTGCAATGACAAAATGGAAGTCTT
CCCTAGTCCGGAGCGCATCGATAAGGTGAAAATCTCCATGGAAAACCTGG
AGACAGTAGTGAGGGAGCGGAACAAGGCGTATCACCTGCTGGAAACAGGT
GAAACGGGTGAACGGCCCCAGAAGGCGGTGAAGAACGCATTTGGCCTGCA
GGTCTCATACAAAGCATGCGAACACGCCCTGCCGCCCTTCATGAACCTCA
AATGGATTAAATCCCGCAACATTGGCTACGGCGGCAGAGCTGTGAACAGA
TTCCTCTTAAAGTACAGGGAGAAACTCTACAATGCCAAGCGCAAGGCCAA
GAACCGCTCCCGCAACGAAGTCATGATGATCCTGCGTCGCAACCCCAATT
TCGATCTGGATGTGCTGCGTCGCCAGTTCCCCGATGTCAACGTGGACAAG
CTGCGCAACGAGGACAAGATTCGTGGTCACTATGTGCCCAAAGTTGGCGT
GGCCAGCTTTCTAGACCAT
FMO05351.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL47-RB | 905 | CG9378-RB | 43..855 | 39..851 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9515399..9515686 | 428..141 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 9515073..9515352 | 703..424 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 9514872..9515019 | 851..704 | 740 | 100 | Minus |
| 3R | 32079331 | 3R | 9515763..9515866 | 142..39 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:30 has no hits.
FMO05351.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:30 Download gff for
FMO05351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL47-RB | 43..860 | 39..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:26 Download gff for
FMO05351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rlc1-RB | 242..1059 | 39..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:34 Download gff for
FMO05351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL47-RB | 43..860 | 39..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:34 Download gff for
FMO05351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9514873..9515019 | 704..850 | 100 | <- | Minus |
| 3R | 9515073..9515350 | 426..703 | 100 | <- | Minus |
| 3R | 9515402..9515684 | 143..425 | 100 | <- | Minus |
| 3R | 9515763..9515866 | 39..142 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:30 Download gff for
FMO05351.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5340595..5340741 | 704..850 | 100 | <- | Minus |
| arm_3R | 5340795..5341072 | 426..703 | 100 | <- | Minus |
| arm_3R | 5341124..5341406 | 143..425 | 100 | <- | Minus |
| arm_3R | 5341485..5341588 | 39..142 | 100 | | Minus |
