FMO05352.5prime Sequence
662 bp (662 high quality bases) assembled on 2008-08-22
> FMO05352.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCCGGTTCGA
TTCGGATCTCCTTGGATTATGGCCATTGGGCTGGTGCTACTACTGCTGGC
ATTCGTCTCCGCCGGAAAGTCGCGTCAGCGTTCGCCAGCCAATTGCCCCA
CCATCAAGCTGAAGCGTCAGTGGGGCGGCAAGCCTTCGTTGGGACTCCAC
TACCAAGTGCGTCCCATCCGCTATGTGGTCATCCATCACACGGTCACCGG
CGAGTGCAGCGGACTGCTCAAGTGCGCCGAGATTCTCCAGAACATGCAGG
CGTATCATCAGAACGAGCTGGACTTCAACGATATTAGTTACAACTTCCTG
ATCGGCAACGATGGTATCGTATACGAAGGCACTGGTTGGGGATTGCGCGG
TGCCCACACCTATGGATACAATGCCATTGGCACGGGCATAGCCTTTATCG
GCAACTTTGTGGATAAACTTCCATCGGATGCGGCTCTCCAGGCGGCCAAA
GATCTGCTGGCCTGCGGAGTGCAGCAGGGTGAGCTGAGCGAGGATTACGC
CCTGATCGCCGGCTCCCAGGTGATCAGCACCCAGAGTCCCGGACTGACTC
TATACAACGAGATCCAAGAGTGGCCGCACTGGCTCTCAAATCCCGCAAGC
TTTCTAGACCAT
FMO05352.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PGRP-SA-RB | 726 | CG11709-RB | 38..647 | 35..644 | 3050 | 100 | Plus |
| PGRP-SA-RA | 1018 | CG11709-RA | 330..939 | 35..644 | 3050 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11561972..11562280 | 35..343 | 1545 | 100 | Plus |
| X | 23542271 | X | 11562518..11562700 | 462..644 | 915 | 100 | Plus |
| X | 23542271 | X | 11562339..11562461 | 344..466 | 600 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:16:53 has no hits.
FMO05352.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:38 Download gff for
FMO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SA-RA | 322..942 | 26..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:27 Download gff for
FMO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SA-RA | 436..1056 | 26..648 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:00 Download gff for
FMO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PGRP-SA-RA | 322..942 | 26..648 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:00 Download gff for
FMO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11561964..11562280 | 26..343 | 98 | -> | Plus |
| X | 11562339..11562457 | 344..462 | 100 | -> | Plus |
| X | 11562519..11562703 | 463..648 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:38 Download gff for
FMO05352.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11456372..11456490 | 344..462 | 100 | -> | Plus |
| arm_X | 11456552..11456736 | 463..648 | 98 | | Plus |
| arm_X | 11455997..11456313 | 26..343 | 98 | -> | Plus |
