FMO05353.5prime Sequence
1214 bp (1025 high quality bases) assembled on 2008-08-22
> FMO05353.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTTCAACACCAGTG
CACAGAATTGGTTCGGCATGGGCCAGACAGCCGTGGATCCGAGCGGCGGA
GTGGCCCAGTTGCTCAACAACAATTCGAGTCTCTACAATCAGCAGCAGCA
GCAGGCGGCGGCGGCGCAACATTCCTTCATGCGCCAGCGATCGCTGACCA
GCTCCAATCCCGTCCTGGGGCGTTCAAACGCCTTGGCCACGCGGCCCCAG
TCGCCGCCCAACGTCCAGGTTGAGTACGAGGTGGCGGTACCCTTCGTTCC
CACCTACCGGCACACTCCATACCACTCGCTCTGGGATCTGCACCAATGCT
CTTCCACACCTCCGACAAGCCTGTCGCACATGGCCCGGATGATGGACTCC
CTGATCCTCGACTCGCTATCCCCATTTGGCTTCACGAAGATCACGGCCAC
CAGTCGACCTTCCCGGAACGCCAGCTTGAAGAAGAGCTCGGAAGGCGGCC
ACTCCTCGACAGCAGAGCGCCACCGGCCCGTCAACAACCTGGGCTCTAAT
GCACCTGGGGGATTGGGCATTGGCGGAAGTGTTCCGTTGCGCAGCAAGCA
GCGGCTACCCACGCAAGAAGTGGCACCACAACCGCGAGCCAGTCAGACGG
CCCAAATGCCATTTCCGTCGCAGCAGCAGGATAATCGGTGGGTGTCCTCC
CTGCGTCGGCGGGATCCCGAGCTGCAGCCCACTTTACCCTCCATCAACAG
CAATGCGAACAGCAGCAGCCTCAGCCAGAGCCACCACGGAAGTGCTGGGA
ACGTGGGATTGGCGGGCGCAGAGCACCTACACCCGCCGCCAGCATGGGCA
CAATGCGCCTGGGGCGACCAGCAAGGCATCCGCCATGACCGCCGCCTTGC
GGAGAGCCGATCCGTGAGCGCCTGCGGCCAGGAGCTCAGCACAAACACCC
AGCTTACTTGAAGCACAGCCGGTAGAGACTCGCTGGACGAAACTCACTCG
ATGACCAGACGCCACCCATCCCTGGAGACACTCGCACGCCAGTCCTAGCA
CAGCCACACACCGCCCATGCTACGAAGACAGCCAGCCTTCTCGCCCTTGG
GCTCAGTTCAACGTGAACCTGGAAAGACTCGGCACGCCATCTGACTCAGT
GACGATGTGCTGGCATAGCCACAATTCCGAAACTGGTTCGATACTGCCGG
AATTCTCAGGAATT
FMO05353.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kat-60L1-RC | 2338 | CG1193-RC | 112..1214 | 34..1103 | 4685 | 96.8 | Plus |
| kat-60L1-RB | 2467 | CG1193-RB | 112..1214 | 34..1103 | 4685 | 96.8 | Plus |
| kat-60L1-RG | 2479 | CG1193-RG | 112..1226 | 34..1103 | 4555 | 95.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5783216..5783530 | 34..348 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 5785440..5785798 | 616..967 | 1445 | 98.1 | Plus |
| 3R | 32079331 | 3R | 5785112..5785381 | 348..617 | 1350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 23:01:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3243..3321 | 707..787 | 120 | 64.2 | Plus |
FMO05353.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:50 Download gff for
FMO05353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RB | 106..1064 | 27..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:29 Download gff for
FMO05353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1193-RB | 106..1064 | 27..978 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:08 Download gff for
FMO05353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kat-60L1-RB | 106..1064 | 27..978 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:08 Download gff for
FMO05353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5785113..5785381 | 349..617 | 100 | -> | Plus |
| 3R | 5783210..5783530 | 27..348 | 99 | -> | Plus |
| 3R | 5785442..5785810 | 618..978 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:50 Download gff for
FMO05353.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1608932..1609252 | 27..348 | 99 | -> | Plus |
| arm_3R | 1610835..1611103 | 349..617 | 100 | -> | Plus |
| arm_3R | 1611164..1611532 | 618..978 | 97 | == | Plus |
