FMO05354.5prime Sequence
1276 bp (1094 high quality bases) assembled on 2008-08-22
> FMO05354.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCTAAAGTTTT
ACGTGTGAATTTGCTGTCTGTAAATAGCAACAAAATTCCACATCAACAAC
AGCAACAACAACAGCAGCAGCAGCAACAACAGCAGCAGCAACAACAGAAT
CAGCAGCAATTGCAGGTTCAGCAACAACATCAGTTGCAGCAGCAGTTTGT
TAACCTAAACAGGAACTACGAGCAACAGATATCTGCCAATTTGGGTAGCC
AACAACATGGGTTCGAGCACAACGGCGTGGGTGTGGGTGCTTCTAGTAGC
GGAAATGAGAACTGCTTTAGCCAGTATAATCTAGAAAACATCACCAGTGT
GGACATGGAGCTGGCCAAACTGCAGAATTTGCAACGCATCAACACGCTAA
AGCTCCTGCATGCCCAAGCTCAACAAATGCCGCTGATCAACCAGCTCCTG
CAGAGCTATGCCGGCAACGCCATAGGCAGCGTCGGTGGAAGCAATCTTGG
TAACTTGATGAGCGCAGGCGGATCATCACTGATGACAGAAATGGCGGGAA
ACGTTGGCGGCATTATAACCACCAACGATGGCCACCTGGATCGCGTAGCT
AAGTTCTATAAGAGTTCGGCTGCCCTGTGCGATGCCACATGCACATGGAG
TGGACACCTGCCGCCGCGTTCGCACCGTATGCTCAACTATTCTCCCAAGG
TCTTCCTCGGCGGGATTCCCTGGGATATTAGTGAGCAGTCGCTCATCCAG
ATCTTCAAGCCATTTGGATCTATTAAAGTGGAGTGGCCCGGCAAGGAGCA
GCAGGCGGCTCAGCCCAAGGGTTATGTTTACATAATCTTTGAATCGGACA
AGCAGTCAAGGCATTACTTTCGGCCTGTGTGCTTCAGGGGATGATTCTCA
CTGTGGTAGGAACTACTTCTTCAAATCTCTTCGCGGCGTATTAAGTCCAA
GGATGTTGAGTCATTCCTTGGATATCGCTGACTCCATTTTGTGCGATCCA
GCTCCCAGAACTTGACCAACGAAACCGTGTTTGTGGGCGCACTGCATGGA
AACTGACTGCGAGGGCTTGGGAAATATATGATGATCTTTCGACGGCTGCT
GATGCTGTATAGATACGGACAGTACAGACCCGATCGATCGGACTGGTGAC
ATTAGCACTCGCTCTAATGAAGGCTGTTCGGCCCCTTTACGAATAGACCG
AAGTTCACAAGAGGTGCGAGCTGATCTCATCTCGGAGAGGTCCATATTTT
CTAGAGCCGGCGTCGCACGCGAGGGC
FMO05354.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| orb-RE | 1964 | CG10868-RE | 72..1254 | 37..1189 | 5115 | 97.1 | Plus |
| orb-RC | 2957 | CG10868-RC | 72..1254 | 37..1189 | 5115 | 97.1 | Plus |
| orb-RG | 8899 | CG10868-RG | 1998..3159 | 58..1189 | 5010 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23266962..23267681 | 776..57 | 3585 | 99.9 | Minus |
| 3R | 32079331 | 3R | 23266719..23266901 | 956..777 | 765 | 98.4 | Minus |
| 3R | 32079331 | 3R | 23266534..23266660 | 1078..959 | 285 | 94.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:57 has no hits.
FMO05354.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:22 Download gff for
FMO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RC | 67..1197 | 31..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:30 Download gff for
FMO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RE | 67..1197 | 31..1141 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:56 Download gff for
FMO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| orb-RC | 67..1197 | 31..1141 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:56 Download gff for
FMO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23266721..23266901 | 777..954 | 98 | <- | Minus |
| 3R | 23266461..23266665 | 955..1141 | 91 | <- | Minus |
| 3R | 23266962..23267680 | 58..776 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:22 Download gff for
FMO05354.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19092183..19092387 | 955..1141 | 91 | <- | Minus |
| arm_3R | 19092443..19092623 | 777..954 | 98 | <- | Minus |
| arm_3R | 19092684..19093402 | 58..776 | 99 | <- | Minus |
