FMO05356.5prime Sequence
1231 bp (1075 high quality bases) assembled on 2008-08-22
> FMO05356.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCCGAAAAAC
AACATTAAGTCGTTTCTCAGCCAGGTGCCGTTGCCGAACGCTATAGCAGC
CAAGTACCAAGAGCCAAGCGAACCAAGAGACGATGAGCAGCCCACGACAA
GCAAGGATGCGCTGGAGAGCAGCTCCTCGGTGCCCTCCGCCTCCGCCGCC
TACGCCTGCATCTGTTGCGAGCACAAGTGCCCGCTGGAGAAGGATTTCTT
GGAGTCGCAGTCGGACAAGGAGGGCGATCCGCCCTTTCTGGTGAACTCAC
CGTCGATGGCGCGTGACTCCAAAGACACAGTAACCGTTCAAATCGCGGCT
CCGCGCTGCAATTGTGCCAACTGCCCGCTGAGGAACCTCTATGACCCGCT
TTTCTCGGAGATCGTGGCGAAGGCGGAGGGGGCCATCGAGAATGGTGTGC
TGCCCGAGCGCATTTACCAGGGTAGCAGTGGTTCCTACTTTGTCAAGGAT
GCCTCCCATCAATGCCTGGCCGTATTTAAGCCAAAGGACGAGGAACCCTA
TGGCAGACTGAATCCGAAGTGGACGAAATGGATGCATAAGCTGTGCTGCC
CGTGTTGTTTTGGCCGAGCTTGCTTGATTCCCAATCAGGGGTACCTCTCC
GAATCAGGAGCCAGCTTGGTTGATCGAAAACTCAATCTGAATGTGGTTCC
AAAGACGCGAGTGGTCAGATTGGTTGCCGAGAGCTTTAACTACGCACGCA
TTGATCGACAGAAGGCCAAGCTGAAGAAGCGCATTAAAGAGCACTATCCG
TCGGCTCACTTCAACCGAATGAGCCTTCCTCTAAAGACTGGCTCCTTTCA
GCTCTTCGTGGAGGGTTACAAGGATGCGGACTATTGGCTGCGGCGCTTTG
AAAGCGAACCCTTGCCGCCTTCAGTGGCGAAGTCGTTCCAACTGCAGTTC
GAGCGCTCGTCGTGCTCGATATATCATACGCAACACGGACGTGCAACGAC
ACTGGCTGATCAGTACGTGCCCTAGATCACGACCCAGTGGAGCACTGCGC
AGACTATGCACGGAGTGTGACCTCAATGCCATGGCTTGGGGCTTCAAATC
AGTGACTACGAGCGCGCAGCTAGCCGAACGACATATTGTGTTCGCCTCGA
CCTAGCGGTGGACGCCAGTCAGCAATGCGCATTGCCAGACGAAATACTCT
GCTAGACTCCCCTACCCGGACCAGAGTGAAT
FMO05356.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pi4KIIalpha-RB | 2565 | CG2929-RB | 238..1288 | 38..1072 | 4865 | 98.5 | Plus |
| Pi4KIIalpha-RC | 3095 | CG2929-RC | 1121..1818 | 391..1072 | 3100 | 97.7 | Plus |
| Pi4KIIalpha-RA | 3122 | CG2929-RA | 1148..1845 | 391..1072 | 3100 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5560777..5561129 | 390..38 | 1765 | 100 | Minus |
| 3R | 32079331 | 3R | 5559379..5559575 | 836..640 | 985 | 100 | Minus |
| 3R | 32079331 | 3R | 5559164..5559321 | 990..835 | 690 | 98.7 | Minus |
| 3R | 32079331 | 3R | 5559669..5559802 | 643..510 | 670 | 100 | Minus |
| 3R | 32079331 | 3R | 5560075..5560193 | 509..391 | 595 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:38:20 has no hits.
FMO05356.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:18 Download gff for
FMO05356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 231..1299 | 29..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:33 Download gff for
FMO05356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 231..1299 | 29..1080 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:01 Download gff for
FMO05356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pi4KIIalpha-RB | 231..1299 | 29..1080 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:01 Download gff for
FMO05356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5559057..5559319 | 837..1080 | 92 | <- | Minus |
| 3R | 5559379..5559574 | 641..836 | 100 | <- | Minus |
| 3R | 5559672..5559802 | 510..640 | 100 | <- | Minus |
| 3R | 5560075..5560193 | 391..509 | 100 | <- | Minus |
| 3R | 5560777..5561136 | 29..390 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:18 Download gff for
FMO05356.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1384779..1385041 | 837..1080 | 92 | <- | Minus |
| arm_3R | 1385101..1385296 | 641..836 | 100 | <- | Minus |
| arm_3R | 1385394..1385524 | 510..640 | 100 | <- | Minus |
| arm_3R | 1385797..1385915 | 391..509 | 100 | <- | Minus |
| arm_3R | 1386499..1386858 | 29..390 | 98 | | Minus |
