FMO05358.5prime Sequence
1279 bp (1076 high quality bases) assembled on 2008-08-22
> FMO05358.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCTCGTAACAA
AGACAAATACGACAGCGCCAATCGGCGGCAGCAGATCTTTCTGTCGCAGG
AGGACATAGCTGCGGGCAAGAAGACGAACTGGAGTGGCCTAGAGATTACT
GGCTGCGTCCGCAATATCAGCCCGTCGCTGTGGGAATTTGAGCATCTAAC
CGCCCTCTACCTGAACGACAACCAGCTGCTGCGATTGCCCGCAGACGTTG
GCATGCTGACCAGCCTCCGAACTTTGGACCTGTCCAGCAATAAGCTAAGA
AGTCTTCCCGCAGAGCTCGGCGAGCTCATCCAGTTGCGGGAGCTGTTGCT
GAACAACAACTTTCTGCGCGTACTGCCTTACGAGATCGGCAAGCTGTTCC
ACCTCGTCATACTCGGCCTCATGGGCAATCCGCTGCAAAAGGAGTTCATG
AACATCTACAACGAACCGAACGGCACGCAGAAACTGCTCACCTACATGCT
GGACAACTTGTCATTTACCGTGAATCCACCGCCCCAGAGGCCCTGGCTGC
CACTGGCCAAGCCCAACAAAACGCGACCAGCCTGCATTTTTACGGTCATG
TGCTATAATGTGCTCTGCGACAAGTACGCGACGCGACAAATGTACGGATA
CTGTCCGTCGTGGGCGCTATGCTGGGAGTACCGAAAAAAGTCGATTATCG
ACGAGATACGGCACTATGCAGCGGACATTATCAGTCTGCAGGAGATCGAA
ACGGAGCAATTCTATCACTTCTTCCTGCCGGAACTCAAGAACGATGGGTA
CGAGGGAATCTTCTCACCGAAGTCGCGTGCTAAGACTATGTCCGAGCTGG
AGAGGAAGTACGTCGATGGCTGTGCGATATTCTTCAGGCGTCCAAGTTTA
CGCTGATCAAGGAATCATTGATCGAGTTCAATCAGCTGGCAATGGCCAAT
GCCGAGGGCTCCGACACATGCTGAACCGCGTAATGCCTAAGGATAACATC
GGTCTGGCCGCACTGCTCAAGGTGAAGGAAACGCATGGGAGCCGATGTCG
AAGGTGACGCAAATCTCGCAGCCGCTGCTCGTCTGCACGGCGCACATACA
CCTGGGAACCCTGGAGTTCTGCCACGGTCAAGTCTATTCCAGACGAATAA
TGCTTAACAATGGAGTGGAAGAGAATCATCCGACAGAGGCGAGCCAAGCT
CGGACTGTCAAAACGAACTCCAATGTCGTTCCACCGTGTCGTGCGTGCCG
GTAAATCATCTTCTTTACACCCTGAATCA
FMO05358.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twin-RF | 2690 | CG31137-RF | 208..1361 | 37..1196 | 5350 | 98 | Plus |
| twin-RC | 2586 | CG31137-RC | 104..1257 | 37..1196 | 5350 | 98 | Plus |
| twin-RE | 3548 | CG31137-RE | 368..1521 | 37..1196 | 5350 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24199283..24199587 | 888..584 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 24219964..24220157 | 339..146 | 955 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24199006..24199213 | 1101..896 | 895 | 97.6 | Minus |
| 3R | 32079331 | 3R | 24219600..24219776 | 514..338 | 885 | 100 | Minus |
| 3R | 32079331 | 3R | 24220214..24220329 | 152..37 | 580 | 100 | Minus |
| 3R | 32079331 | 3R | 24199882..24199951 | 584..515 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:54:22 has no hits.
FMO05358.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:44 Download gff for
FMO05358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1475 | 37..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:16 Download gff for
FMO05358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1475 | 37..1146 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:55 Download gff for
FMO05358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twin-RE | 368..1475 | 37..1146 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:55 Download gff for
FMO05358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24220215..24220329 | 37..151 | 100 | | Minus |
| 3R | 24199275..24199587 | 584..895 | 99 | <- | Minus |
| 3R | 24199883..24199951 | 515..583 | 100 | <- | Minus |
| 3R | 24219600..24219775 | 339..514 | 100 | <- | Minus |
| 3R | 24199006..24199213 | 896..1101 | 97 | <- | Minus |
| 3R | 24219965..24220151 | 152..338 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:44 Download gff for
FMO05358.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20045937..20046051 | 37..151 | 100 | | Minus |
| arm_3R | 20024997..20025309 | 584..895 | 99 | <- | Minus |
| arm_3R | 20024728..20024935 | 896..1101 | 97 | <- | Minus |
| arm_3R | 20025605..20025673 | 515..583 | 100 | <- | Minus |
| arm_3R | 20045322..20045497 | 339..514 | 100 | <- | Minus |
| arm_3R | 20045687..20045873 | 152..338 | 100 | <- | Minus |
