FMO05359.5prime Sequence
1225 bp (1043 high quality bases) assembled on 2008-08-22
> FMO05359.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGTCAATCC
GGCGGCCAGATGCTGTGCGAGATCAAGAACATGGCTCTTTCGGGCGATCC
GGAGCTAGATGGCGAGATCCGCAAGTGGATTCGATGGGACAAATGCGCTA
GCACCGCCTGCCAAATCATGGACGCAGTTCGGGCGAAAGACTGGGACACG
CTGCGCAAGAGACTGTGCACCCGCATCAGCTTCGGCACGGCCGGATTGAG
GGCTTGCATGCGGGCTGGCTTTGACTCCATGAACGAGCTGGTGGTGATTC
AGACGGCGCAGGGCTTATGTGAGTACATCAAGGAACAGTACCCTGATCCG
GCGGACTGGTCCGGACGTGGCATTGTCTTCGGGTATGACGGTCGTTACAA
TAGCCACCGCTTCGCCGAGCTCTCGGCCATTGTGTTCCTAAACAACGACT
TTAAGGTGTGGTTGTTCAAGCGCTACGTGGCCACGCCCATGGTGCCCTTT
GCCATCTTGAGGCTACAGTGCTTGGCCGGCGTCATGGTGACCGCCTCGCA
CAATCCCAAGGAGGACAATGGCTACAAGGTGTACTGGACCAATGGAGCCC
AAATCATTCCGCCGCACGACGAGGGCATACAGGAGTCGATTCTAAACAAT
TTGGAGCCCAAGGGCTCATCCTGGGACGATTCGGCGATGTGCTCGAACAC
AATGCTGGAGGATCCGTACGATATCGTTGTGCCGCCCTATTTCGATATAC
TGAAGAAACAACTGCCTTGCACTTCGCTGGAGGCCAACGGAAGGTGCTCT
CTCTCATTCACCTATACGCCATGCACGGCGTGGGCTATGCATTTGTGAAG
CAGGCTTTCGCCCGAATCAATCTTAAGCCTTTCATATCGGTGTGCGAGCA
GCAGAGCCGGACCCAGAGTTCCCACCACTCCGATGCCCAACCCGGAGGAG
GGAAAGACCTCGTTGGATTTATCATTAAACGGCGAAAGCCAACAGCAGCC
AATAATTTAGCACGATCGGATGCGACCGCCTGGCAGTGCGAAGTACGGAG
ATGTAGCTATAAGCTGTTCACGGCACGAATGGCGCTCTTTGGGCTGGTGG
TCTCTGGACTGCCAATGGAACCGACTGCAGTAGATACTGTGAGATAGCAG
TACGTTGGACTCAAGAATTCAAGGCCATGGCCACGGAGGTCCAGTCTCAA
CGTACTGATCATGATGGTTACAAGC
FMO05359.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pmm45A-RA | 2443 | CG8073-RA | 324..1415 | 38..1108 | 4930 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9108301..9109006 | 1002..302 | 3285 | 99 | Minus |
| 2R | 25286936 | 2R | 9109233..9109395 | 200..38 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 9109070..9109172 | 302..200 | 515 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:25:02 has no hits.
FMO05359.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:39 Download gff for
FMO05359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 316..1426 | 30..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:20 Download gff for
FMO05359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 321..1431 | 30..1120 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:24 Download gff for
FMO05359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pmm45A-RA | 316..1426 | 30..1120 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:24 Download gff for
FMO05359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9108168..9109006 | 302..1120 | 96 | <- | Minus |
| 2R | 9109071..9109172 | 200..301 | 100 | <- | Minus |
| 2R | 9109234..9109405 | 30..199 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:39 Download gff for
FMO05359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4995673..4996511 | 302..1120 | 96 | <- | Minus |
| arm_2R | 4996576..4996677 | 200..301 | 100 | <- | Minus |
| arm_2R | 4996739..4996910 | 30..199 | 97 | <- | Minus |
