FMO05362.5prime Sequence
1169 bp (924 high quality bases) assembled on 2008-08-22
> FMO05362.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGTCGGACTCGGAAGT
CAGTAATATGTCGGATAGTGGCTCCGAAGATGGATCCATTTCCAACAAGT
CGCAACGGAGTGCCCGCTCCAAGTCAAGATCGCGTTCCAGGTCCGGTTCC
AGGGGATCTCGCTCCGTTTCCAGGTCCAGATCACGCTCTCAATCGGGCCA
CTCTAGATCTGGCTCGGAATCTCCACAGAGACGAGATAATCGCGGCAAGA
GCGATGAATCCGGCGAAGAGGAGGAGGAGCCACCAGGTGAGGACATCGAT
TCCGAGGAGTACGATGAGGAGGAGAACGACGATCACCCAAGGAAGAAGAA
AAAGAAGGAGCGTTTTGGGGGCTTCATCATTGACGAGGCCGAAGTGGACG
ATGAAGTCGATGAAGATGACGAGTGGGAAGAGGGTGCCAATGAAATTGGC
ATTGTTGGCAATGAGATCGATGAGCTGGGCCCCACAGCCAGGGATATTGA
AATTCGACGACGAGGCACAAACCTTTGGGACACTCAAAAGGAGGACGAGA
TAGAGGAGTATCTCCGTAAGAAGTACGCCGATGAGTCAATTGCAAAACGC
CACTTTGGAGATGGCGGTGAAGAGATGTCAGACGAAATTACCCAACAAAC
TCTATTGCCCGGCATCAAGGATCCCAATTTGTGGATGGTGAAATGTCGTA
TAGGCGAGGAGAACGCCACAGCGCTTCTTCTAATGCGAAAGTACTTAACC
TACCTGAACACAGACGATCCATTGCAAATCAAATCTATTATTGCACCAGA
GGGCGTCAAGGGAAACATTTACCTGGAGGCCTATAAGCAGACTCATGTTA
AAACTTGCATTGATAACGTGGGTAATCTTCGGATGGGCAAATGGAAACAG
GAAATGGTGCCCATCAAGGAGATGACGATGTGCTAAAGGTGGTCAAGGAG
CAAGTGCCTAAAGTGAAACATGGGTGCGCCTGAGGGCGTCTCTACAGACG
ACTCGCCAGTGACTACGTGATCTGACGACAGTACATCTAGTGCTCCTCGC
AATGACTACACGCATGCAAGGACTGCCACAGCACGGATGACGATGCAGCG
CAGAGACGCTCTAACTACCGTTGATCCAGCTAGCATGAGTATACTATGAT
TCGCTCTCAGACGATGCGA
FMO05362.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spt5-RA | 3460 | CG7626-RA | 117..1181 | 34..1072 | 4625 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19437972..19438345 | 34..407 | 1870 | 100 | Plus |
| 2R | 25286936 | 2R | 19438785..19439069 | 669..952 | 1345 | 98.9 | Plus |
| 2R | 25286936 | 2R | 19438590..19438728 | 531..669 | 695 | 100 | Plus |
| 2R | 25286936 | 2R | 19438407..19438531 | 406..530 | 625 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:36:10 has no hits.
FMO05362.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:48 Download gff for
FMO05362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt5-RA | 112..1071 | 26..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:41 Download gff for
FMO05362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt5-RB | 111..1070 | 26..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:39 Download gff for
FMO05362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spt5-RA | 112..1071 | 26..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:39 Download gff for
FMO05362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19437967..19438343 | 26..405 | 98 | -> | Plus |
| 2R | 19438407..19438531 | 406..530 | 100 | -> | Plus |
| 2R | 19438590..19438727 | 531..668 | 100 | -> | Plus |
| 2R | 19438785..19439104 | 669..983 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:48 Download gff for
FMO05362.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15325472..15325848 | 26..405 | 98 | -> | Plus |
| arm_2R | 15325912..15326036 | 406..530 | 100 | -> | Plus |
| arm_2R | 15326095..15326232 | 531..668 | 100 | -> | Plus |
| arm_2R | 15326290..15326609 | 669..983 | 97 | == | Plus |
