FMO05363.5prime Sequence
1295 bp (1066 high quality bases) assembled on 2008-08-22
> FMO05363.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGTATCGCCGCCGGT
ATTCCGCCTTCGAGCCCAGCACACCCCGCGTGGGAGTGCTACCCTCTCCA
CCGCCTCAATATGCCAACCCTCCCGCCGACACTGCCGCCCCGAAAACGCC
ACCCAAGCTGAGCGTACACTTTGACCCCAATTTGCCGAAAGACAACGATA
GCAACAACAACCTCACCGGCAGCGAAAATGCAAATGCTAAAGGCGGCGGT
CGCAAGGCGCGTTCACTAAGCAATTCGCCACTGTATCACCGAAAAAAGCG
GTACGGCCATCTGCCGGCGCTGATGTCGAATAACGGGCCGACGGCCAGCA
GCAACTACCAGCTGCTGAACAGTGCGAATCTGCGAGATCTCATCGACGGC
CAACGCCACTCGCATCACGTAAGCAGGCGCGATGACAGCCAAAGCCACAG
TCATAGCGAAAGCCCAAGTCACATTGGCCACATTAGCCAAAGCAACCAAA
GCATACCAAGCCTCCCAAGCCTGCCAAGCGGCAAAAACAAGACGAAAGAT
GGCAAAAAGCTGAAGGCAACTTTAACGGCGGCCATGTCATCGTCGCTGCT
GCGACGCAAGGCGCACAGCAATCACAGTCAACAGCAGAAACTGCAACTGC
AACAGCAACAGCAAGAGCAACATCAGCAACAGCTGCAGCAGCAACAATTG
AGAAGCAACAACAGCAAGGCAATTGCAAATGCTGCCCGCCATTCGCTGGG
TCATTCACCCTCCGCTGCCGCCGCCGCTGCTGCAGTGCAGCAGACGCTTG
TCTACGAGCGGCGACGCGTCAGCAGCGCCCACTCCTCCCCCTCGCCCACC
TCCAGGCACCACTCCCCAGTGCACCAGTGCATGCTGATGCGGCGGCGCAG
CGACTACAGCGTCGAGCAGATCGAGCAGTGGAAACGCCAGCAGCAATTGT
TGCCGCGATCCGGACGCAGATTAGCTTGCCTGTCGCTGATCCGTTCCTAG
AGAAAGTAAATTTTATCAGATTCTGGAAGAGGACGACTCACAGATCTTCG
TGAGGTTCTTTCGTTTTCACAGTGCTATGATTCTGATACCCACCTCCGCC
AAGTTGGTTGTCTTTCGACACCCCACGCTCTTGTAAGAAAGCTTCTAGCC
CTTCGTCTTCAACGGGTGTGCGAGCGACACCGCCTTGGAATCGGGAGACC
CAGTTCTGGGCATGTCTACCTACGGTACTTATCAGAATCTGGTCAAATGT
TATAATCTGTCGCCTAAGGTGCTGCATGAGGAGGACATTCAGTTG
FMO05363.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RG | 2786 | CG17299-RG | 181..1340 | 34..1194 | 5360 | 98.1 | Plus |
| SNF4Agamma-RE | 3308 | CG17299-RE | 1646..1862 | 976..1194 | 670 | 90.7 | Plus |
| SNF4Agamma-RC | 3197 | CG17299-RC | 1535..1751 | 976..1194 | 670 | 90.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21205108..21206042 | 34..968 | 4675 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21210876 | 1026..1114 | 335 | 96.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:02:38 has no hits.
FMO05363.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:13:50 Download gff for
FMO05363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 176..1343 | 29..1198 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:43 Download gff for
FMO05363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 174..1341 | 29..1198 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:48:04 Download gff for
FMO05363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RG | 176..1343 | 29..1198 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:48:04 Download gff for
FMO05363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21205103..21206050 | 29..975 | 99 | -> | Plus |
| 3R | 21207619..21207667 | 976..1026 | 94 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:13:50 Download gff for
FMO05363.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17030825..17031772 | 29..975 | 99 | -> | Plus |
| arm_3R | 17033341..17033389 | 976..1026 | 94 | -> | Plus |
