FMO05365.5prime Sequence
1285 bp (1075 high quality bases) assembled on 2008-08-22
> FMO05365.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCATCCGGACC
GTTTTTTGTGGGCGTGGACGTGGGCACGGGCAGTGCGAGGGCGGCCCTGG
TCGCCTGCGATGGGCGTGTCCTGGAGCAGGCGGTGCAGACGATCCAAACG
TGGAATCCTGAGCCGGGCTACTACAACCAGTCATCCGATAATATATGGCA
GTCCATCTGCCAGGTGGTGAAGAAAGTCATTGGCGGCGTCGATAAGTCAA
AAGTCAAGGGCATTGGCTTCGATGCCACCTGCTCCTTGGTGGTTCTGGGC
CCCCAGGGATCGCCGCTGACGGTGAGCAAGTCCGGTGAGGCGGAGCAGAA
CATAATCCTCTGGATGGACCATCGTGCCGAGCAGGAAACCCAAGAGATCA
ATGCCTTCAAGCACTCGCTGCTGAAATATGTGGGTGGTCAGGTTTCGCTG
GAAATGGAGGTTCCCAAATTGCTGTGGCTGAAGAGGAATCTGTCACAGAC
TTTTGGAAATATTTGGAGGGTCTTTGACCTGCCCGACTTTCTGACCTGGC
GAGCCACTGGAGTGGACACCCGATCACTTTGCTCGGTGGTGTGCAAGTGG
AACTACGATGCAGCGAATGGCAGTTGGAACAAGGAGTTCCTGAAGCAGGC
GGACTTGGAGGAGTTGACACAGAATAACTTCGAGAAATTGGGCAGTGATG
TCCAGCCGCCTGGCCGAACGGTGGGCAAAGGACTCACGGCCAAAGCTGCT
GGGGAACTGGGCTTATCCGCCGGCACTGTGGTGAGCACCTCCCTAATCGA
TGCCCATGCTGGCGCCTTGGGAATGTTTGGATGCCGCTCAAAGGAGTCCA
AGGTGCCGACGATGTCCAGGGTAAAATGGCTCTGATTGCCGGTACATCCA
CCTGCCACATGAGCATCACCCGGGAGGATGCTTCGCACAAGTGTTTGGGG
TCCCTATCAGATGCATTATTCCCGGCTACTTCCTAAACGAGGGTGGTCAG
AGCATCGCAGACATCTCCTAGATCCCGTCCTCAGTCCGCATGATCTTACG
CCGACTGAATCCCAATTGGGGAAAGGATAGTTTATTACAGCACTTAATAA
GTTGCTGCCGGACTTGCAGCAGCTCAAGATAGCCAGTGTGGCCTTTCTCA
CCAGTATGTCCATGTCTGCGGACTTGTATGCATCGGCCCCATCGATTCAG
CGTGCGAGAGATGAATACTGGCATGGACATGTAACGCGGAACGTGAATCC
TCTGGCACATCAATATTGTGTGCGTGTCTGCTCAG
FMO05365.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11594-RE | 2123 | CG11594-RE | 384..1633 | 37..1263 | 5085 | 95.4 | Plus |
| CG11594-RD | 1879 | CG11594-RD | 140..1389 | 37..1263 | 5085 | 95.4 | Plus |
| CG11594-RC | 1944 | CG11594-RC | 205..1454 | 37..1263 | 5085 | 95.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4023880..4024708 | 1043..221 | 3755 | 98.6 | Minus |
| 3L | 28110227 | 3L | 4024945..4025130 | 222..37 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:26 has no hits.
FMO05365.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:22 Download gff for
FMO05365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 202..1374 | 34..1186 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:46 Download gff for
FMO05365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 200..1372 | 34..1186 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:53 Download gff for
FMO05365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11594-RC | 202..1374 | 34..1186 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:53 Download gff for
FMO05365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4024945..4025133 | 34..222 | 99 | | Minus |
| 3L | 4023723..4024706 | 223..1186 | 96 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:22 Download gff for
FMO05365.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4023723..4024706 | 223..1186 | 96 | <- | Minus |
| arm_3L | 4024945..4025133 | 34..222 | 99 | | Minus |
