FMO05366.5prime Sequence
1116 bp (971 high quality bases) assembled on 2008-08-22
> FMO05366.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGGCAGGCAAACTCCT
GACTGTTTTCTCCCTTCTGGCCATCGCCGCATCCTGTCGCGCAGGATTCG
CCGCCACCTATGCCGGCTATCATCCCGCCTATGCCACCTACCAGGCACCG
GCTGCCGTCTACCATGCGGCACCAGTGGCCCAGGCTGCTGTCTACCAGCA
GGCGGCTCCAGTTTACGCCAAGACCTTTGTGCCAGCTGCTCCTGTATACA
CCAGATCCTATGCCCTGCCCACTCCAGTTGTCAAGGCGGTGGCTCCTGCT
CCTCTCGCTCTGCCCGTTGCTGCGCCGGTGGTGAAGACCCTGGCTGCTGC
TCCCGTGGTCGCTGCTCCAGTGGTCAAGACTGTGGCTGCTGCTCCCGCTG
TACTGAAACAGGTAGAGTTGGAATCTTCGCCGCGCTACGACTTCTCCTAC
GGCGTTCACGACAGCATCACCGGCGATATCAAAAGCCAGGTGGAGACCCG
TGACGGTGGCAATGTTGTGGGATCCTATTCCGTCCTGGATGCCGATGGTT
TCAAGCGCACAGTGACCTACACCGCCGACGACATCAACGGATTCAATGCG
GTGGTCCAGCGGGAACCGGTTGTCGCTGCCCGCGCAGTTGCTGCTCCAAT
GGTTTCCGTCTCCGCTCCAGCTCCAGTTCCCGTCCATATTTCCTCCGCTC
CCGTTGCCTCGCTGCCCGCTCCCATCTACTATCCACACCAGCAGGTGTTC
GCCCCACAGCAGATTCAACAGGTTGCCGAGCAGCTGGTGAGGTGGTGGAG
TCTCCTGTGGCCCAACAGCCCGAGCTGGAAACCACTCCCATTGACTACAA
CGAGGGTCAGCAGCAGCAGCACGAGCAGCAGCAGCAGACCTATCCCCAGG
ATCAGCAGTTCCCACCCTACTCGCCAGCTGGTCATCCTCCCCAGCTCCTG
ACAGCGATGATTCCGACGTGGTGAGGCACGATCTGCCCCGGAGGCAACAG
CACCACACCACCGCTGCTCAGTTACGGAGGAAAACAGCAGACGCTGCATG
CTTCTAGAACATTCGTTTGGCCGCGGGACCAGGTAAGGACATATCTGATC
ATATCTTAGTCTAATC
FMO05366.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr31A-RA | 1229 | CG33302-RA | 144..1152 | 34..1036 | 4790 | 98.7 | Plus |
| Ccp84Ae-RA | 754 | CG1330-RA | 311..398 | 541..628 | 185 | 80.7 | Plus |
| Cpr64Ab-RA | 552 | CG15007-RA | 275..377 | 519..621 | 185 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10054862..10055858 | 46..1036 | 4580 | 98.7 | Plus |
| 3R | 32079331 | 3R | 6691243..6691330 | 628..541 | 185 | 80.7 | Minus |
| 3L | 28110227 | 3L | 4211055..4211157 | 621..519 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-28 20:38:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2854 | 395..297 | 135 | 65 | Minus |
FMO05366.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:25 Download gff for
FMO05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr31A-RA | 138..1162 | 29..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:47 Download gff for
FMO05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr31A-RA | 136..1160 | 29..1047 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:12 Download gff for
FMO05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr31A-RA | 138..1162 | 29..1047 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:12 Download gff for
FMO05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10054860..10055868 | 44..1047 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:25 Download gff for
FMO05366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10054860..10055868 | 44..1047 | 98 | | Plus |
