FMO05367.5prime Sequence
1194 bp (1028 high quality bases) assembled on 2008-08-22
> FMO05367.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGCTAAAGCCATCG
ATTATCTGCCTCTTTTTGGGCATTTTGGCGAAATCATCGGCGGGCCAGTT
CTACTTCCCCAACGAGGCGGCCCAGGTGCCCAACTATGGGCGCTGCATAA
CGCCGAATCGGGAGCGTGCGCTGTGCATCCATCTGGAGGACTGCAAGTAC
CTATACGGCCTGCTGACCACCACCCCGCTCCGGGACACGGACCGGCTTTA
CCTGAGTCGCAGCCAGTGCGGCTATACGAACGGCAAGGTGCTCATCTGCT
GTCCGGACCGCTACAGGGAGAGCTCATCGGAGACGACGCCACCGCCCAAG
CCCAATGTAACCAGCAACAGCCTTCTGCCGCTGCCAGGACAATGCGGCAA
CATCCTGTCCAATCGCATCTATGGCGGAATGAAGACCAAGATCGACGAGT
TCCCCTGGATGGCTCTAATTGAATACACCAAAAGCCAGGGCAAAAAGGGT
CACCATTGCGGCGGATCCTTGATCAGCACAAGATATGTGATCACAGCCTC
GCATTGTGTCAACGGAAAGGCACTGCCCACCGACTGGCGGTTGTCCGGTG
TTCGTTTGGGCGAATGGGACACCAACACTAATCCCGATTGCGAAGTAGAT
GTGCGCGGCATGAAGGACTGCGCGCCACCGCATCTGGACGTGCCCGTGGA
GCGTACTATACCCCATCCCGACTATATACCGGCCTCCAAGAACCAGGTCA
ACGACATAGCCCTGCTGCGTCTGGCCCAGCAGGTGGAGTACACCGACTTT
GTGCGACCCATTTGCCTGCCTCTGGACGTCAATCTGCGGTCGGCCACCTT
CGACGGCATCACCATGGACGTGGCCGGCTGGGGCAAAACGGAGCAGCTGT
CGGCCAGCAACCTCAAGCTGAAGCAGCCGTGAGGGATTCCGGATGGATGA
GTGCCAGACGTCTACAGCAGCCAGACATTCTCTCGAGACACACAGATGTG
TGCCGCGGCAAGAAGGCGTCGACTCTGTCCCGGTGACCTCGGGGACCGCT
CATCGGCTTGGACACCACAGTGAACACCTACTACTTCTGCCGGCTTCATC
ATTTGACGACTCGGTGCGCTGGCGAATGCAGGATTTAACGCTGGTGGCAA
GATACGTGATGGACAAACTATTGATCCCAGCTTTCTAAACATTC
FMO05367.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ea-RA | 1430 | CG4920-RA | 205..1352 | 36..1157 | 4980 | 97 | Plus |
| ea-RB | 1527 | CG4920-RB | 363..1449 | 97..1157 | 4675 | 96.8 | Plus |
| ea-RB | 1527 | CG4920-RB | 205..265 | 36..96 | 305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15329631..15330247 | 484..1087 | 2430 | 97.1 | Plus |
| 3R | 32079331 | 3R | 15329180..15329567 | 97..484 | 1940 | 100 | Plus |
| 3R | 32079331 | 3R | 15328933..15328993 | 36..96 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:00 has no hits.
FMO05367.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:44 Download gff for
FMO05367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ea-RA | 197..1281 | 28..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:48 Download gff for
FMO05367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ea-RA | 196..1280 | 28..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:49 Download gff for
FMO05367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ea-RA | 197..1281 | 28..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:49 Download gff for
FMO05367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15328925..15328993 | 28..96 | 94 | -> | Plus |
| 3R | 15329180..15329566 | 97..483 | 100 | -> | Plus |
| 3R | 15329631..15330247 | 484..1087 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:44 Download gff for
FMO05367.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11154647..11154715 | 28..96 | 94 | -> | Plus |
| arm_3R | 11154902..11155288 | 97..483 | 100 | -> | Plus |
| arm_3R | 11155353..11155969 | 484..1087 | 97 | == | Plus |
