FMO05369.5prime Sequence
1269 bp (1040 high quality bases) assembled on 2008-08-22
> FMO05369.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCGATGTGG
TTTCTAGGTGCTTTGGTGGCCACCGTTGTGCTCCTAACGGGCAGCGTGCA
AGCCACAGATCTACCCTATGAAACACTGAGGGAGCAAATCATGGAAGCGG
AGCGCGTGGCCTCGCTGGGTGGCAACATCTGGCTGTCGTCCGACGAGGAG
AAGGCCAACAGCATCCTGATGAACGCCAAGCGGGCAGAGATCGCCGAAGG
ACTCAAGACGCCGGAGAAGTACGCGCCCGCGATGCACTTCTTCCAGGGCA
GGCAGTACGTCCGGCAGAGCGAGGTATTCCGCATGATCCAGAAGATTCCG
AAGGGCGCCTTTCTGCACGGTCACAATACGGGTATGGTGACTTCACGCTG
GATCATACAGAATCTGACCACCACCAATAATCTGTACACCTGTCGCAATG
TGGATGGACTGCTAGTGTTCACCTACGATCAGTCCGGATGCCATAGCGAA
GTGCAGAATGTGTGCACTGAGAGGATAAATGCCGAGGATCGGGGAAAGTA
CGAGCGCCAGCTGGAGAAGCACATCAATATGCACGGACCAAGGCCGGAAG
CTCTATTGCCAAATCGTAAGAAGATTTGGGAGCGCTTTGAGAACATATTT
ACCACCGTGGATCGGCTGTATAAATACCGACCCACCTATTGTGCCTATCA
CAAGCGAATGTTGGAGGAACTTTGCGAGGATAACATTATCTATGCCGAGA
TACGAGCCTCCCTCTCGCCGCTGTACGACGACAACAATCGAACTCTGAGC
ACCTTGGAGGTGGCCAACGAGCTGGAACGGATTGTGGAGGAATTCAAGGC
CAAGCACCATGACTTCATCGGTGTTAAGTGATATATGCCAAGCGGAATCG
CGCATCCGAGGAGGAGATGTTGCGCCGAATCACCACTTTTAAGCAGCTGC
ACCATGCCAAACCGAACTTTGTGATTGTTTCGATCTGATTGGTCAGAGAC
ATGGAGAACCGCTGAACAAGTATTATCAACAACTGTCGATCTTCTAGCAC
GGCAACTACTTCTTCCACGCCGCGCAAACGAATTGGAATGGCCGACGGAC
TGGAACATAATGGAACGCCATCTGCTGAATACGAGCGGAATGCCATGCCC
TTCGCCTGCAAACATTCCCAATTGCGTCACACATACAAACGTAACTTGCC
ATCGAGGGTAATCCATTCCACCAAGTTGGGACTGCTCTCGGGATTCTGCC
AATACTACTCGGGCGCACT
FMO05369.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Adgf-D-RA | 1613 | CG9621-RA | 76..1203 | 39..1156 | 5135 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13704333..13704818 | 600..115 | 2415 | 99.8 | Minus |
| 3R | 32079331 | 3R | 13703872..13704054 | 951..770 | 865 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13704110..13704281 | 770..599 | 860 | 100 | Minus |
| 3R | 32079331 | 3R | 13705252..13705327 | 114..39 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:46:13 has no hits.
FMO05369.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:57 Download gff for
FMO05369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adgf-D-RA | 76..1207 | 39..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:50 Download gff for
FMO05369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adgf-D-RA | 132..1263 | 39..1159 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:50 Download gff for
FMO05369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Adgf-D-RA | 76..1207 | 39..1159 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:50 Download gff for
FMO05369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13703872..13704053 | 771..951 | 99 | <- | Minus |
| 3R | 13704110..13704279 | 601..770 | 100 | <- | Minus |
| 3R | 13704333..13704818 | 115..600 | 99 | <- | Minus |
| 3R | 13705252..13705335 | 36..114 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:57 Download gff for
FMO05369.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9529594..9529775 | 771..951 | 99 | <- | Minus |
| arm_3R | 9529832..9530001 | 601..770 | 100 | <- | Minus |
| arm_3R | 9530055..9530540 | 115..600 | 99 | <- | Minus |
| arm_3R | 9530974..9531057 | 36..114 | 92 | <- | Minus |
