FMO05370.5prime Sequence
1242 bp (1069 high quality bases) assembled on 2008-08-22
> FMO05370.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGATACGGATATT
CAAAGATGCTTCCGGAGCAAAACGGTGTTCCTAACTGGAGCCACCGGCTT
TTTGGGTAAAGTCGTTATTGAGAAACTTTTGCGGACCACAGAGGTGAAAC
GCATCTATGTGCTAATTAGACCAAAGCGCGGAGTTGAGATTAAGGATCGG
ATTATCACCTGGTCAAAAGATGCGGTATTTGAACTGCTGCTGAAGTCCAA
GCCGGAGGCACTTCAAAGAGTATGTCCCATCGCTGGGGATTGCCTCGACT
TTGATTTGGGAATCAGCGAGAATGATCGAAGACTTCTGGCCTCCGAGGTG
CAGATTGTCATCCATGGAGCTGCCACCGTGCGATTCAATGAGCCGCTTCA
CGTGGCCCTGGCCATCAACACAAGGGCCACCAAGCTGATGATTCAACTGG
CCAAGGAAATGAGGCAGCTGGAGGCCTTCGTTCATGTATCGACCGCCTTC
TCCAACTGCGTTATCTACAACATCAAGGAAAATTTCTACCCCGAGCATCT
CAACTGCAGTTCCGATAAGGTGCTTGCAATGGCAGAGCTGATGAGTGACG
AGCTACTGGACAACATGGAGCAAGCGCTCCTTGGCTCGTTTCCCAACACG
TACACGTACACCAAAGCACTGGCGGAGGATGTGATCCTGAAGGAAGCGGG
TGGCTTGCCACTTTGCATCTTCCGACCGGCAGTCATTATTGCGGCCCACA
AGGAACCCATCTCCGGCTGGATAGACAACATGTACGGACCAATGGCAATT
CTTTTCGGGGTGGCCCGTGGAGTACTGCGCATTGCCACCATCGATCACCA
TGCCGAGGCAAGCCTGGTGCCCGTGGATTATTGTGCCAATTTGACTCTGG
CCTGTACCTGGAGACCATTGTGGAAGGTAACGAGATGGGAACACAGAAAC
TCCTCTCATCTACCACTGGCGCCCATTGAGCAGACAGATCACCCACGGGG
AGTTCATTCGACATGCTCTCGATGGACGCACCAACTGCCGCTGACAAAGA
TGATATGGTATCCCTTCATCACTGCATTCACAGGCTGGCCCTTCCCCTGG
CAGCTTTCTTCTATCACCTGCAAGCTTACTTTTTTGACTGGCTCTTGGCT
GATGGCGGAGCGACATATTAGTTACAAATCAGACTTCGATCTGGCCATCC
TGCAGCTGGCCTTTACTGGCGAATCGGATTCTTGTGAGCGCA
FMO05370.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17562-RA | 1674 | CG17562-RA | 101..1232 | 36..1152 | 5225 | 98.2 | Plus |
| CG17560-RA | 1712 | CG17560-RA | 32..726 | 36..730 | 745 | 74.4 | Plus |
| CG14893-RB | 1688 | CG14893-RB | 123..951 | 74..902 | 485 | 71.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16615653..16616164 | 224..735 | 2560 | 100 | Plus |
| 3R | 32079331 | 3R | 16616222..16616562 | 736..1070 | 1425 | 97.9 | Plus |
| 3R | 32079331 | 3R | 16615409..16615600 | 36..227 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 16618320..16618782 | 268..730 | 575 | 74.9 | Plus |
| 3R | 32079331 | 3R | 16621289..16621626 | 345..682 | 400 | 74.6 | Plus |
| 3R | 32079331 | 3R | 12392072..12392238 | 511..345 | 250 | 76.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:00 has no hits.
FMO05370.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:43:25 Download gff for
FMO05370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17562-RA | 101..1241 | 36..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:35 Download gff for
FMO05370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17562-RA | 99..1239 | 36..1159 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:58 Download gff for
FMO05370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17562-RA | 101..1241 | 36..1159 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:58 Download gff for
FMO05370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16615409..16615597 | 36..224 | 100 | -> | Plus |
| 3R | 16615654..16616164 | 225..735 | 100 | -> | Plus |
| 3R | 16616222..16616662 | 736..1159 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:43:25 Download gff for
FMO05370.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12441131..12441319 | 36..224 | 100 | -> | Plus |
| arm_3R | 12441376..12441886 | 225..735 | 100 | -> | Plus |
| arm_3R | 12441944..12442384 | 736..1159 | 95 | | Plus |
