FMO05371.5prime Sequence
1249 bp (1046 high quality bases) assembled on 2008-08-22
> FMO05371.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGCATCTGAGAGG
GGATGTTTTGTTAGGGGGTGTGGCGGCGGACGTCTCTAAACTAACGCCTC
TATCACCGGAGGTCATCTCCCGACAGGCGACCATCAACATCGGCACCATC
GGTCATGTGGCTCACGGCAAATCCACGGTGGTCAAAGCCATATCCGGCGT
GCAGACTGTGCGCTTCAAGAACGAACTGGAGCGCAACATCACAATCAAGC
TGGGTTATGCCAACGCCAAAATCTACAAGTGTGACAACCCCAAGTGCCCG
CGCCCGGCCAGCTTCGTATCGGATGCATCCAGCAAGGACGACAGCTTGCC
CTGCACTCGGCTCAACTGCTCCGGCAACTTCAGACTGGTGCGACATGTGA
GCTTCGTGGATTGCCCCGGTCACGACATTCTTATGGCTACCATGTTGAAC
GGTGCTGCTGTGATGGACGCTGCTCTGCTGCTCATTGCTGGCAATGAATC
CTGTCCACAACCGCAAACCTCTGAGCATTTGGCCGCCATTGAGATTATGA
AGCTGAAACAGATTCTGATCTTGCAAAACAAGATCGATCTGATCAAGGAG
AGCCAGGCGAAAGAGCAGTACGAGGAGATCACCAAATTCGTCCAGGGCAC
CGTAGCTGAGGGCGCTCCGATCATTCCGATCTCGGCCCAGCTTAAGTACA
ACATCGATGTGCTCTGCGAGTACATTGTGAACAAGATACCAGTGCCGCCG
CGTGACTTCAATGCCCCGCCCCGTCTGATCGTCATCCGATCCTTCGACGT
GAACAAGCCAGGCTGTGAGGTGGCAGACCTTAAGGGCGGTGTGGCCGGTG
GCTCCATTCTGAGCGGCGTGCTGAAGTAGGCCAAGAGATCGAGGTGCGTC
CGGGCGTTGTGACCAAGATAGCGATGGCAACATCACCTGCCGTCCAATCT
TCTCCCGTATCGTCTCGCTCTTCGCCGACAGATGAGCTGCAGTACCCCGT
GCCCGCCGTCTGATGGTGTGGGCACCAGATCGATCCTACGCCTGTGCCGT
GCCGATCGTTTGGTCGTCAGGTGCTAGGCGCCGATGCAACTGCCGACATC
TAACAGAACTGAAATCTCGAATACTGGCTGGCGTCCCCTTCTCGCGTTCG
TACGAATGGTACAAAAGGAGCGCGGTTGAAACTGCAGAACGATCTGTGTT
ATCGAATCCTCAACTGTGGCGCATCGCCACAAGGTAATGTGCACATATA
FMO05371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| eIF-2gamma-RC | 1886 | CG43665-RC | 98..1271 | 35..1189 | 5120 | 96.9 | Plus |
| eIF-2gamma-RD | 2062 | CG43665-RD | 177..1307 | 78..1189 | 4905 | 96.8 | Plus |
| eIF-2gamma-RB | 1922 | CG43665-RB | 177..1307 | 78..1189 | 4905 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15258784..15259388 | 1083..486 | 2535 | 98 | Minus |
| 3R | 32079331 | 3R | 15259449..15259687 | 491..253 | 1195 | 100 | Minus |
| 3R | 32079331 | 3R | 15262545..15262722 | 255..78 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 15262796..15262840 | 79..35 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:06 has no hits.
FMO05371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:46 Download gff for
FMO05371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RC | 91..1167 | 26..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:36 Download gff for
FMO05371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Su(var)3-9-RC | 91..1167 | 26..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:37 Download gff for
FMO05371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| eIF-2gamma-RC | 91..1167 | 26..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:37 Download gff for
FMO05371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15258784..15259383 | 491..1083 | 98 | <- | Minus |
| 3R | 15259450..15259686 | 254..490 | 100 | <- | Minus |
| 3R | 15262547..15262721 | 79..253 | 100 | <- | Minus |
| 3R | 15262797..15262845 | 26..78 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:46 Download gff for
FMO05371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11084506..11085105 | 491..1083 | 98 | <- | Minus |
| arm_3R | 11085172..11085408 | 254..490 | 100 | <- | Minus |
| arm_3R | 11088269..11088443 | 79..253 | 100 | <- | Minus |
| arm_3R | 11088519..11088567 | 26..78 | 92 | | Minus |
