FMO05372.5prime Sequence
1247 bp (1036 high quality bases) assembled on 2008-08-22
> FMO05372.5prime
ATAGCATACATTATACGAAGTTATCAGTCGACATGCAGCGGGCGCGCTCT
ACACTGACACAAAAGCTTCGGTTTTGCCTTAGTCGGGACCTGAACACCAA
AGTTGGCAACCCGGTTAACTTCGAGACTGGAAAGCTTAGCGGAGCTTTAA
CTCGCATCGCCGCCAAAAAACAACCATCACCAACGCCATTCTTACCGGCG
ATCAGACGATATTCGGACTCCAAGCAGAGCACTTTGAAGAATATGGCCGA
TCAGAAACTGCTGCAAACCCCGCTGGCACAGGGCGATCCGGAGCTGGCCG
AGCTGATCAAGAAGGAGAAGGAGCGCCAGCGCGAAGGACTCGAGATGATC
GCCAGTGAGAACTTCACCTCGGTGGCGGTTCTCGAGAGCCTGAGCTCCTG
CCTGACCAACAAGTACTCCGAGGGATATCCCGGCAAGAGGTACTACGGTG
GCAACGAGTACATCGACCGCATAGAGCTGCTCGCCCAGCAACGCGGACGC
GAGCTGTTCAACCTGGACGATGAGAAGTGGGGCGTTAATGTGCAGCCTTA
TTCCGGATCCCCGGCCAATCTGGCTGTCTACACGGGCGTCTGCCGGCCCC
ACGATCGCATCATGGGCCTGGATCTGCCCGATGGCGGTCACTTGACGCAC
GGTTTCTTCACGCCCACCAAGAAGATATCGGCCACATCGATCTTCTTCGA
GAGCATGCCGTACAAAGTGAACCCGGAGACGGGCATCATCGATTACGATA
AGTTGGCGGAGGCGGCGAAGAATTTCCGGCCGCAGATCATCATTGCTGGC
ATATCGTGCTACTCCCGTCTGCTGGACTATGCGCGTTTCCGACAGATTTG
CGATGATGTGGGCGCCTACCTGATGGCCGACATGGCCCATGTGGCGGGCA
TTGTGGCCGCGGGATTGATACCATCGCCGTTCGAATGGGCCGACATTGTG
ACACCACCACGCACAGACACTGCGAGGTCCGCGGCGCCGGCGTGATCTTT
CTTCGCAAGGCCGTGCGCAGCACCAAGGCCAATGAGAACAAGGTACTCTA
CGATTCTGGAGGAAGCGCATCACCAGGCGGTGTTTCCATCACTCCAGGGT
GTTCGCCCACAACGCCGTGGCTGGCTTGCCACCGCCTTCAAGCAGGCAGA
GATCCGAATTCAAAGCCTACCGAAGCCAGGTTCAGAATGCAAGCTTGGCG
AGCTCATTTCCGGACCATACAGAGTGGCACGCGCGAACTCGACTACT
FMO05372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3011-RA | 2001 | CG3011-RA | 255..1401 | 30..1171 | 5305 | 98.2 | Plus |
| CG3011-RC | 1592 | CG3011-RC | 1..992 | 185..1171 | 4530 | 97.9 | Plus |
| CG3011-RB | 2054 | CG3011-RB | 516..1454 | 238..1171 | 4265 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5913667..5914405 | 1171..438 | 3020 | 96.6 | Minus |
| X | 23542271 | X | 5916263..5916472 | 239..30 | 1050 | 100 | Minus |
| X | 23542271 | X | 5914579..5914782 | 441..238 | 1020 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:30 has no hits.
FMO05372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:43 Download gff for
FMO05372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 248..1411 | 21..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:38 Download gff for
FMO05372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 244..1407 | 21..1181 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:04 Download gff for
FMO05372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3011-RA | 248..1411 | 21..1181 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:04 Download gff for
FMO05372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5913659..5914403 | 440..1179 | 96 | <- | Minus |
| X | 5914581..5914780 | 240..439 | 100 | <- | Minus |
| X | 5916263..5916481 | 19..239 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:43 Download gff for
FMO05372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5807692..5808436 | 440..1179 | 96 | <- | Minus |
| arm_X | 5808614..5808813 | 240..439 | 100 | <- | Minus |
| arm_X | 5810296..5810514 | 19..239 | 98 | | Minus |
