FMO05373.5prime Sequence
906 bp (898 high quality bases) assembled on 2008-08-22
> FMO05373.5prime
AGCATACCTTATACGAAGTTATCAGTCGACATGATGGCCTCCAGTGGTGG
CGCCTGTTCCCCTTTCGCCTATGTGGCCTGGGCGCTGTTTGCCTTGTTGC
TGACGCACGGCGGAGACAATGTTGTGGACGCCCGGCGTAACCAGGGCAAC
CAGCGGAAGACCTCCTCCTCGTCAAGCTCCTCCAACTACGGTCACGTGAC
GCAGCCCAGCTACAACACGAATGGCCACGCCGCCGGGAACTCTCATGCAG
ATGTGGCCAAACTGAGTTACCCCAACTACAACTCGCAGCCGAATCGACCA
ATGGCCGCGGGCTCATCAGGGTCCCCAGGCTCCGCCCCTCAGCCAGGTTG
GAATGTGCCGCAGGGTCCGCCGCCCGCCTACTCCGCTTCCAACCCCGCCG
GAGGAGCCCGACCCAACATGCACGAGCCGCCGCCAGCCTACCATGCCCCC
AACTACGGAGCAGCTCCTCCCAACTATGGAGCCGCCACCGGATCGAATGT
CCATCAGCCGCAGTACTCTGGAGTGCCAGCTGGAGCCACCTACTACCCGG
CTGCAGGACCCGGCAGTGGCTATTCCCCCAATATCCCCGCTGGCGCTACA
TACTATCCGTCCGCCGGCCATGTTCCCATGGGCGGTGGCTATCACCCAGC
TGCTGCTCCGCCTCCGGGGGCCACCTACTACCAGGCGGGGATCTGCTTTG
CCGCCCGGAGCCACCTATTAATTCTGCACCACCACAACAGTTCCTCCTCT
GGCTTGGGCTTCGGAACTGGGACTGCTTGCTGGCGGCTTTGGGAGGTGCC
CTGCTGGGGTCACGCCCTCACTCCCTCGGGAAGGCAGTTCCTCCTCGCAA
CCGGTTGCCGCAGCTTCAGTTGCTGGTCAGGATCGCATAATCATCATTAA
CACCGG
FMO05373.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5273-RB | 2193 | CG5273-RB | 204..1074 | 29..906 | 4155 | 98.7 | Plus |
| CG5273-RC | 2103 | CG5273-RC | 114..984 | 29..906 | 4155 | 98.7 | Plus |
| CG5273-RA | 2124 | CG5273-RA | 135..1005 | 29..906 | 4155 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 759797..760529 | 29..764 | 3530 | 99.6 | Plus |
| X | 23542271 | X | 760687..760820 | 770..906 | 475 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:04 has no hits.
FMO05373.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:47 Download gff for
FMO05373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5273-RA | 133..1005 | 26..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:56 Download gff for
FMO05373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5273-RB | 178..1050 | 26..906 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:13 Download gff for
FMO05373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5273-RA | 133..1005 | 26..906 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:13 Download gff for
FMO05373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 759795..760528 | 26..763 | 99 | -> | Plus |
| X | 760682..760820 | 764..906 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:47 Download gff for
FMO05373.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 653828..654561 | 26..763 | 99 | -> | Plus |
| arm_X | 654715..654853 | 764..906 | 94 | | Plus |
