FMO05374.5prime Sequence
1231 bp (1061 high quality bases) assembled on 2008-08-22
> FMO05374.5prime
TATAGCATACATTATACGAAGTTATCAGTCGACATGATACGGGCACCGCT
AGTCAAGGCGCTGGGCGCTCTGGGCTCGCCCACACATCAGATGGCCAGCC
GGGCGGTGCGAACCAGCGCCATGGTGGCCCAGACACCGGCGAAAGCGCCC
GAGAAGATCGAGGTCTTTGTGGATGACATTCCCGTGCAGGTGGTACCCGG
CACCACTGTCCTCCAGGCTGCTGCTCAGATCGGCGTGGAGATACCCAGAT
TCTGCTACCACGAACGTCTTGCGGTGGCCGGCAACTGCAGGATGTGCCTC
GTCGAGGTGGAGAAGAGTCCCAAGCCAGTGGCCGCCTGCGCTATGCCCGT
GATGAAGGGCTGGCGCATCAAGACCAACTCGGATTTGACCCGCAAGGCGC
GCGAGGGCGTCATGGAGTTCCTGCTGATGAACCATCCGCTGGATTGCCCC
ATCTGCGATCAGGGCGGCGAGTGCGATCTGCAGGATCAGGCCATGGCCTT
CGGTTCCGATCGATCCCGCTTCACGGACATTAACTACACGGGCAAGCGCG
CTGTCGAGGACAAGGACATCGGACCGCTAGTCAAGACCATCATGACACGC
TGCATCCACTGCACCCGCTGTGTGCGTTTCGCCTCCGAGATTGCCGGCGT
TGATGACCTGGGCACCACTGGCCGTGGCAACGACATGCAGATCGGCACCT
ACGTGGAGAAGCTCTTCCTTACCGAACTGTCCGGCAACGTGATCGACCTG
TGCCCCGTGGGAGCGCTGACCAACAAGCCCTACAGTTTTGTGGCCCGTCC
CTGGGAGATCCGTAAGGTGAGCAGCATCGATGTGCTGGACGCCGTCGGCA
GCAACATTGTCGTCAGCACCCGCACCAATGAGGTGCTGCGCATCCTGCCC
CGTGAGACGAGGACGTCACGAGGATGGCTTGCTGACAATCGCGCTTCGCC
TGCGACGGTCTGAAGCGCAGCGCCTGTGCTCCCATGGTGCGCATGCCCAA
CGGCGACTACAGGCCGTAGAGGGGGAGGTGCCCTCATCGCCCGTGCCAAG
CCATTAAGCAGCCGTGAAGAATTGCCGTTTTCTGGCCACTTGCCGAACTG
AGCTCAGGTGACTGAAGAACTGCTGAACCGTCTGGCAGATGGTGCCCTGA
AACTAGATTTATGCCGAGACCGCACGTCTATATCCCTCTTGACACACCAT
GCCGGTTTGAGAGGGCCAACCGCTCTCTGTT
FMO05374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ND75-RB | 2543 | CG2286-RB | 69..1191 | 34..1135 | 4965 | 97.4 | Plus |
| ND75-RA | 2571 | CG2286-RA | 97..1219 | 34..1135 | 4965 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8250228..8250730 | 1041..548 | 2070 | 97.8 | Minus |
| X | 23542271 | X | 8250798..8251131 | 548..215 | 1670 | 100 | Minus |
| X | 23542271 | X | 8251200..8251383 | 217..34 | 920 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:01:39 has no hits.
FMO05374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:09:56 Download gff for
FMO05374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..1223 | 34..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:57 Download gff for
FMO05374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RB | 259..1393 | 26..1138 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:12 Download gff for
FMO05374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ND75-RA | 97..1223 | 34..1138 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:12 Download gff for
FMO05374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8250118..8250729 | 549..1138 | 95 | <- | Minus |
| X | 8250798..8251129 | 217..548 | 100 | <- | Minus |
| X | 8251201..8251391 | 26..216 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:09:56 Download gff for
FMO05374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8144151..8144762 | 549..1138 | 95 | <- | Minus |
| arm_X | 8144831..8145162 | 217..548 | 100 | <- | Minus |
| arm_X | 8145234..8145424 | 26..216 | 97 | | Minus |
