FMO05376.5prime Sequence
1224 bp (1017 high quality bases) assembled on 2008-08-22
> FMO05376.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTCAAAAA
CTATCGTGTTGCCAAAAGTGCGGCGATTGGAAGTGGTGTACATCTAAGGA
CAACGAGGAGTCAACGCTGCGTATACGCAATGCCAATGCCAACTATTTTA
CGGGCATTCCACAAGGCGACAAAACAGATGGCGCCAGCTCAGCAGTATTG
GGCGTTTTGAAGGTCGATCTGTGCCTGGAGGACAACCATGAGGAGCACCA
TACGAGTCACTTCTATGCGGCAGCTGCCAAGGAAGCGTTGGTCGTGCGAC
GAGGAGAACCCTTCCGGCTGAAGATCCACTTCAATCGAGACTACAGTCCC
AGCAAGGACGCCATCAGTTTCATTTTCACAGTAGCGGATGACACCAAGCC
GAGTCCCGGTCATGGAACACTCAATGCCCTGGTGCCGCACGATGGCATCG
ATTATCTGGGCGACACTTTGGAATGGGGAGCCGGCATCGAATCGCATGAG
GGTCAAACGCTTACGGTGCTAATCAAGCCACCATCCACCTGTCCCGTAAC
GGAATGGAAACTGGACATCGACACGAAGCTGCTGGGCGATGGATCGCGAA
GCTATCCCCTGCCGTTGCCCATCTATGTACTCTTTAATCCCTGGTGTCCG
GATGATCAGGTGTATCTGGAGGATCGTGATCAGCGCAAGGAGTACGTGAT
GCACGATACCACGCTCATCTGGAGGGGATCGTACAACAGATTGCGTCCAT
CGGTTTGGAAAATCGGGCAATTCGAACGACATGTGCTCGAGTGCAGCCTA
AAGGTATTGGGTACGGTGGGCAGGATTCCGCCAGCCTACAGAGGCGATCC
CGTGAGAGTTGCTCGCGCCTTGTCCGCACTGGTGAATTCGTGGATGATGA
CGTGTTTTGCTGGGCACTGATCAGAGGACTTCTCCGCGCGTGCACCCACC
AGTGACTGGGTCGTGAGATTCTTCAGCATCTACAGACCAGAGTCGTGAGT
TTGCACAGTGCTGATTTCACGGTGTCTGACACATGCAGAGTCTGGAATAC
GTCTAGATCATCCTGCTACTCCTCGCCACGATACACAAGCCTCACTCACG
TGACGTTCATCGACCGAACACAGATGGATGCAGAAACTGGAACGATCTGG
AACTATCCGGGATAGCTTGAGTCACGAGTTGCTGGTAACCGAACTTATGC
TGCAAGTGGTAACACACCTCCTAC
FMO05376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tg-RA | 2797 | CG7356-RA | 338..1505 | 36..1157 | 4660 | 95.5 | Plus |
| Tg-RB | 2601 | CG7356-RB | 331..1358 | 176..1157 | 3960 | 94.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8024512..8025278 | 173..936 | 3655 | 99.3 | Plus |
| 2L | 23513712 | 2L | 8011742..8011883 | 36..177 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:59 has no hits.
FMO05376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:29 Download gff for
FMO05376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 338..1332 | 36..1013 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:42 Download gff for
FMO05376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7356-RA | 336..1330 | 36..1013 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:29:06 Download gff for
FMO05376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tg-RA | 338..1332 | 36..1013 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:29:06 Download gff for
FMO05376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8011742..8011883 | 36..177 | 100 | -> | Plus |
| 2L | 8024517..8025369 | 178..1013 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:29 Download gff for
FMO05376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8011742..8011883 | 36..177 | 100 | -> | Plus |
| arm_2L | 8024517..8025369 | 178..1013 | 97 | == | Plus |
