FMO05377.5prime Sequence
1237 bp (962 high quality bases) assembled on 2008-08-22
> FMO05377.5prime
TCGGAAAACAGCAACATTTCCTACTGCCAGGCGGTGGCCAATCGCACTTC
GTTCTTTACCACCGCCTATAATGGCATTCCGGAAACCCTAATACTCAACA
CCATTTTCTGGGTACTCCTGATCCTTTTGTTTACGGTTCTGCGGCACCAG
GCCGGTGACTTTGGACGTCTAGCGCTGGTCAACAGCAACGGCAGCAAGAA
GCGCTGGACGGAGATTTTCTACTCGCGCGCCGCCAGTGTGGTCGATCCCC
AGCCGAGCACTTCAACGCAGGTATCGCCTAGACCAAGTACCACCTCCCAA
GGAGTTCCCGACTCCACGCCCTTGTCCCCTATCCAGCCGGAGGAGGGGCT
TTTCGGCTGGATACGGGTTACGCTGAAGCTGCGTAAGGAGACCATACTGC
TGCATACTGGACCGGATGCCGTGCATTACTTGTCCTTTCAGCAGCACCTG
ATGGCTGTAATGGCATTGGTTACCATAGTCTCCCTGGTCATTATTCTGCC
TGTGAATTTCCTGAACGGGCCCAAGGAAAATCCGTACGATGTGAATGCCT
TCGGACGCACCACGATGGCGAATCTTTCTCCGGATTCACCTTGGCTGTGG
GTGCACACGATCATCACGATTCTGTATATTCCGCTCGTAGTGCTCATCAT
GCGGCGCGCCTCGGGACGGAATGCCTTCAAAAAGGCAGCCACCCGCACGA
TTATGATTTCAAACATATCCTCCAGCGATCGCAACAAGACTGTGGTACGG
AACTATATGCAGGAGCTCTTTCCGGACGTCACCATCGAGAATGTGTCATT
TGCGTACACATTTCACGACTATACGTAGGAACGCCGAGTTCGAGCGAGTT
CATGAAGCACGATTGGTACTGCGAGCACCATAGGAACAGGAATACTCTCA
TGGTTAACCAGAAATGGTGTCCTGCAAAAGGGAGAACGCCTACCATATTA
TCAGCGAGAAGAAGCGCAGTGTCCGGCGATGTTGCCCGTTCTGCGTGCTT
CACCATGAATGAGCCCTGGACATTGCGTTTATCACCGTGTCCCTGTGCAG
AGCCAGAACATTGTACGCCACTTTAACACGGGACCTACGGCATGACTTGG
GGTCGCTCCGCTGCCTGATATCTTTTGGGACCTAATGTGAATAAGACATG
GACTGAATCTCTGGTGGAGTGCAGGCTTCTGTTCTTTTCGGCACACGGCA
GTGGTGAAGCCCTCATACGCGCAACAGTGAAGATGAA
FMO05377.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11210-RA | 2863 | CG11210-RA | 188..1355 | 1..1146 | 4930 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8099573..8100477 | 1..904 | 4350 | 99.4 | Plus |
| 2R | 25286936 | 2R | 8100538..8100677 | 906..1042 | 290 | 90.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:52:35 has no hits.
FMO05377.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:10:57 Download gff for
FMO05377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 188..1234 | 1..1042 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:01 Download gff for
FMO05377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 187..1233 | 1..1042 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:28 Download gff for
FMO05377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11210-RA | 188..1234 | 1..1042 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:28 Download gff for
FMO05377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8099573..8100475 | 1..902 | 99 | -> | Plus |
| 2R | 8100534..8100677 | 903..1042 | 91 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:10:57 Download gff for
FMO05377.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3987078..3987980 | 1..902 | 99 | -> | Plus |
| arm_2R | 3988039..3988182 | 903..1042 | 91 | == | Plus |
