FMO05379.5prime Sequence
1234 bp (1054 high quality bases) assembled on 2008-08-22
> FMO05379.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAGGAACGCGCT
GTGCTCGCTAACATTGCGTCCATAATCACCAAGGACTTGCTGATTGATCA
GCCGTCCGTGGACATCAATTCAGGCATTTATCCGCTGTTGACCTTCGACG
AGGACGACGATGAGGCAGAGATTTTCGCTTTGATGCAGCGAAAACGGGCG
TTGGCTTCCGGCCGGAAGCGCAGGAACTCCCAAGAACCGGAGGACCGGAA
ACAGGACCTAAAGATGCCCAAGCTGGAGTGGCACCACCCGGAACTCAACC
TACTGCACCGCTACACGGATGCCCAGTTCGAGTCCTACCTTCACATGCGC
AAGCTAACATTCCTGAAAATCCAGCAAGCCCTAGAGAAAACTTTATGTGG
AATCGCGTTGCCAGGCTATCCCAGTCCGCCGGCGCAGACCATGGTGTCCT
TGGCCCTGTGGAAGCTGTCCACCGACGAGCACTTCGAGGAGATCGCCCGC
AAGTTTCGACTGCCCTGGGCTCTCTGCCAGCAGGTGGTGCGGGCATTCTG
GCACTGCATCTCCGATAATTACGAGAGCTTTATTAAGTGGCCAAACTCAC
TGGCGGCCCAGCGGAGCACCCTGCAGGGATATCAGAGACTGGACAAACTG
CGCTGCTTTCGGGAACTGTTTGGCATAATAACGCTGAGGCGACTGGACGT
ATTTCTGGAGTCGGAGCACGCCGATGTGCCTGTGGTGCTCCAGTTAATAT
GCAATGCCGAGCGAAAGATCGTCGACTGCTACGTTGAGCTGGCCATGGAG
TACAGCTTCGAGGACTCACCCATTGGCCAGACATTGGCCCTGAATCCGAG
GACCATGCCGGCGGGCAGCTATCTCATCGGAAACGATGTGTTTCCTCTCA
AATCCTACCTGATGCGGCCCATTGAGCCGAGTGCTTCCGCAAGGATGCGA
TGTTCAACGAAATGCTGCGTCCGCTTCGAGCTGGCGGAACAGTACTGACA
CCTTGCACGACGTTTCAATACCCTGTACGCTTTGAGGCCCGGATTTGACG
AGGTGCGCCTCATTGTGGAAAAGCATCTGGTCATGCACAACATTCTGCAA
GAGATCAAAGGACGATGACTGAGGATCTTGGGCATAGTCTTTAGTGCGAT
GCCGAGGTCCAGGCAGTGAAGACTCAGGACTGCCCAAGGTAACTCTGACA
CGGTGCCTCGACGGGCAAACAACTTCTAGACACA
FMO05379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32187-RA | 1326 | CG32187-RA | 72..1184 | 35..1137 | 5075 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17805127..17805840 | 1069..365 | 3140 | 98.6 | Minus |
| 3L | 28110227 | 3L | 17805964..17806294 | 365..35 | 1655 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 3524..3579 | 989..934 | 127 | 69.6 | Minus |
FMO05379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:43 Download gff for
FMO05379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..1139 | 24..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:03 Download gff for
FMO05379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..1139 | 24..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:05 Download gff for
FMO05379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32187-RA | 62..1139 | 24..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:05 Download gff for
FMO05379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17805127..17805839 | 366..1069 | 98 | <- | Minus |
| 3L | 17805964..17806304 | 24..365 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:43 Download gff for
FMO05379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17798227..17798939 | 366..1069 | 98 | <- | Minus |
| arm_3L | 17799064..17799404 | 24..365 | 98 | | Minus |
