FMO05382.5prime Sequence
1258 bp (1034 high quality bases) assembled on 2008-08-22
> FMO05382.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTCCTCGAAAGT
GATAACCTCGTTAATGGCCGAGAGCATACTGCTCTCAAAAGTGGGCCAAG
TGATATCCGGCTACTCGCCGATCACGGTTTTTCTCCTTGGATCCATTCTA
ATTTTCCTCGTAGTCTACAACAAGCGCCGATCCCGACTGGTGAAGTACAT
CGAAAAGATCCCGGGACCTGCGGCCATGCCCTTCCTGGGCAACGCCATCG
AAATGAATGTGGATCACGACGAGCTCTTTAACCGCGTCATCGGCATGCAA
AAGTTGTGGGGCACGCGTATCGGAATCAATCGCGTTTGGCAGGGAACAGC
TCCAAGGGTGCTCCTCTTCGAGCCTGAGACCGTGGAGCCCATACTGAACA
GCCAGAAGTTTGTGAACAAGAGCCACGACTACGACTATCTGCATCCTTGG
TTGGGAGAGGGTCTGCTTACCAGCACAGATCGCAAGTGGCACTCCCGCAG
GAAGATCCTCACACCTGCCTTCCACTTCAAAATCTTGGACGATTTCATCG
ACGTTTTCAATGAGCAGAGCGCAGTCTTGGCCAGAAAATTGGCGGTGGAG
GTGGGCAGCGAGGCGTTCAACCTGTTCCCCTACGTCACGCTCTGCACCTT
GGACATTGTTTGTGAAACCGCCATGGGTCGCAGAATTTACGCCCAGAGCA
ATAGTGAATCGGAGTATGTGAAGGCGGTCTATGGCATTGGATCGATTGTA
CAGAGTCGGCAGGCGAAGATTTGGCTGCAGAGCGACTTCATTTTCAGCCT
GACCGCGGAGTACAAGCTCCACCAGAGCTACATAAACACCCTGCATGGAT
TTTCCAACATGGTGATCCGCGAGCGAAAGGCTGAGTTGGCCATTCTCCAG
GAGAACAATAACACAATAATAATAACGCCCCGATGCCTATGATGACGTGG
GAAAGAAGAGCGCCTGCCTTCCTGGACCTTCTCATCGATGCCTTCTAGAA
GACTGTTCTTTCTAATGAGGACATTCGCGAGGAGGTAGACCACCTTTATG
TTCGAGCCACGACACCACCTCTGCGGCATTTCTGAACCTATTTTTTTGCT
TGGGCTGCCACAAGTACAGAGCGCGTGGTGAAGAACTGACCTTATCTTTC
GCAAGACAAGAAACGCCGACACATGAAACTTAGGATTTGCAATCTCTCGT
GAGATTCGTCTTATAAGACCCTGTACTGTGTTTCCCAAGTGTCCCAAAGA
TGAGTGTC
FMO05382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cyp4c3-RA | 1906 | CG1438-RA | 134..1249 | 37..1138 | 5025 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30894171..30894405 | 37..271 | 1175 | 100 | Plus |
| 3R | 32079331 | 3R | 30899495..30899758 | 734..993 | 1120 | 98.5 | Plus |
| 3R | 32079331 | 3R | 30897861..30898022 | 503..664 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 30897678..30897796 | 386..504 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 30897502..30897618 | 271..387 | 585 | 100 | Plus |
| 3R | 32079331 | 3R | 30898111..30898181 | 664..734 | 355 | 100 | Plus |
| 3R | 32079331 | 3R | 30899846..30899907 | 1017..1077 | 200 | 95.2 | Plus |
Blast to na_te.dros performed 2014-11-28 22:16:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Damb\P-element_T | 3329 | Damb\P-element_T P_T 3329bp Derived from AF012414. | 1490..1528 | 523..561 | 114 | 76.9 | Plus |
FMO05382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:40 Download gff for
FMO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4c3-RA | 125..1260 | 28..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:51 Download gff for
FMO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4c3-RA | 202..1337 | 28..1148 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:03 Download gff for
FMO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cyp4c3-RA | 125..1260 | 28..1148 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:03 Download gff for
FMO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30899496..30899784 | 735..1016 | 96 | -> | Plus |
| 3R | 30897863..30898022 | 505..664 | 100 | -> | Plus |
| 3R | 30898112..30898181 | 665..734 | 100 | -> | Plus |
| 3R | 30894162..30894405 | 28..271 | 98 | -> | Plus |
| 3R | 30897503..30897618 | 272..387 | 100 | -> | Plus |
| 3R | 30897680..30897796 | 388..504 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:40 Download gff for
FMO05382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26719884..26720127 | 28..271 | 98 | -> | Plus |
| arm_3R | 26723225..26723340 | 272..387 | 100 | -> | Plus |
| arm_3R | 26723402..26723518 | 388..504 | 100 | -> | Plus |
| arm_3R | 26723585..26723744 | 505..664 | 100 | -> | Plus |
| arm_3R | 26723834..26723903 | 665..734 | 100 | -> | Plus |
| arm_3R | 26725218..26725506 | 735..1016 | 96 | -> | Plus |
