FMO05383.5prime Sequence
1263 bp (1060 high quality bases) assembled on 2008-08-22
> FMO05383.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGAAGATCCTGA
TGCGAGCGGACACCCATGTGTCCTTCTCCGTGCCCGTCGAGGAGCCCAAG
GCCATTTGTACCTTCTCCCAGGTCTTGGCTGCTCTGAGTGTCTCGCTGGG
CTCCCTAGTGGTCGGATTTGTCAGCGCTTACACGTCGCCTGCTCTTGTGT
CGATGACCGATCGGAATATCACCTCGTTTGAGGTCACCCAAGATGCTGGT
TCTTGGGTTGGTGGCATCATGCCGCTGGCTGGATTGGCAGGTGGCATAGC
CGGAGGACCCTTGATCGAATATCTGGGCAGGCGCAACACCATCCTGGCCA
CTGCGGTGCCCTTCATTGTCTCATCACTACTGATTGCCTGTGCTGTGAAT
GTGGCTATGGTTCTGTGCGGACGATTCCTGGCTGGATTCTGCGTTGGCAT
TGCCTCTTTATCCCTGCCCGTCTACCTGGGTGAAACTGTGCAGCCTGAGG
TGCGAGGCACTTTGGGTTTGCTGCCCACGGCCTTTGGTAACATAGGCATC
CTGCTCTGCTTCGTGGCGGGATCCTTTATGAATTGGTCGATGCTGGCCTT
CTTGGGAGCTGCTCTGCCCGTTCCCTTCCTGATTTTAATGTTCCTTATTC
CGGAAACTCCGCGCTGGTTTGTGGGCCGTGGTCTGGAGGAGCGCGCCAGG
AAGGCTTTGAAATGGCTGCGTGGCAAGGAGGCTGATGTGGAGCCCGAACT
GAAGGGTTTGATGCGATCCCAGGCCGATGCCGATCGTCACGCATCGCGAA
ACACCATGTTGGAGCTGCTTAAGCTCAACAATCTGAAGCCACTATCAATT
TCCTTGGGTCTGATGTTCTTCCAACAGTTCAGCGGTATCAACGCGGTTAT
CTTCTACACGGTCCAGATCTTCAAGGATGCGGGATCCACCATTGATGGCA
TCTCTGCACGATCATTGTGGGATTGTTAACTTTTTGGCTACGTTTATAGG
CATCGTTCTGATTGATCGGGCGGCAGAAAAGATTTTTTTTAATGTTTCGA
ATTCGCCATGGTTCTGAACCTGGTTCGGTTCTGGGCGCTTTTTCTACATT
GCAGACGTACGGTCCGAATGTGTTCCCATGGTGGTGCCACTCCCTGCCTC
GCTCATCTAGTTCGGATTCCCCTTGGCTCGAACCATTCAGGCGTAGATGG
TGAATTCGCGCCAATCGGAATCGGTCTCGTGCCACGCTCTCTACTGGTTC
TGCACGATTTGTT
FMO05383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:46:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tret1-1-RB | 1980 | CG30035-RB | 160..1251 | 38..1129 | 5035 | 97.9 | Plus |
| Tret1-1-RA | 3132 | CG30035-RA | 1393..2403 | 119..1129 | 4630 | 97.7 | Plus |
| Tret1-2-RA | 1695 | CG8234-RA | 113..1204 | 38..1129 | 3605 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:46:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11673045..11673822 | 248..1023 | 3775 | 99.6 | Plus |
| 2R | 25286936 | 2R | 11676526..11677299 | 248..1019 | 2720 | 90.7 | Plus |
| 2R | 25286936 | 2R | 11672713..11672843 | 118..248 | 655 | 100 | Plus |
| 2R | 25286936 | 2R | 11676208..11676338 | 118..248 | 505 | 92.4 | Plus |
| 2R | 25286936 | 2R | 11672215..11672300 | 38..123 | 430 | 100 | Plus |
| 2R | 25286936 | 2R | 11676047..11676132 | 38..123 | 325 | 91.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:46:27 has no hits.
FMO05383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:08 Download gff for
FMO05383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 156..1255 | 34..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:53 Download gff for
FMO05383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30035-RB | 251..1350 | 34..1134 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:57 Download gff for
FMO05383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tret1-1-RB | 156..1255 | 34..1134 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:57 Download gff for
FMO05383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11672211..11672298 | 34..121 | 97 | -> | Plus |
| 2R | 11672717..11672842 | 122..247 | 100 | -> | Plus |
| 2R | 11673045..11673830 | 248..1031 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:08 Download gff for
FMO05383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7559716..7559803 | 34..121 | 97 | -> | Plus |
| arm_2R | 7560222..7560347 | 122..247 | 100 | -> | Plus |
| arm_2R | 7560550..7561335 | 248..1031 | 99 | -> | Plus |
