FMO05384.5prime Sequence
1269 bp (1077 high quality bases) assembled on 2008-08-22
> FMO05384.5prime
GTATAGCATACATTATACGAAGTTATCAGTCGACATGACCAAGAATGGAC
ACAGCAATTCGGCTTACGTCGCCGATCATCCGGACAAATTGGAGCTGGCG
GAGAAGGGTCAGAAGAACAAGGCCGTAGTGGCCAAGGATCCCGACTACAA
TCCCTATCATCATCGCGATGTGGAGCATCCCACCACGAACTCGGAAACCC
TGTTCCATTTGCTAAAGGGTTCGCTGGGCACAGGAATTCTGGCCATGCCA
AATGCCTTTCGCAACTCCGGTTATATCACTGGATCCATTGGTACGATTGT
CATTGGTTTCATTTGCACCTTCTGCATTCACCAGCTGGTCAAGGCTCAGT
ATGAACTGTGCCGCAGGAAGAAGATGCCCAGCATGAATTATCCAATGGTA
GCGGAAACGGCAATGGGCGAAGGCCCCAAATGTTTCCGGGTTTTTGCTCC
CTACATTGGCACAGTGGTTAACACCTTCCTGCTAATCTATCAACTGGGCA
CCTGTTGCGTTTACGTGGTCTTCGTGGCGTCCAACATTAAGGCCATTGTG
GATGCAGTGGCCGATACGAGCATCGATGTGCGACTCTGCATGATCATCAT
ACTGCTGCCACTGATCCTCATCAACTGGGTGCGGAATCTTAAGTATCTGG
CTCCGTTCTCCACGCTGGCCAACGCCATTACGATGGTATCGTTCGGCATC
ATCTGCTACTACATCTTCCGCGAGCCAGTTACCACAGAGGGCAAGGATGC
CTTTGGAAAACCCTCGAATTTCCCGCTCTTCTTTGGCACTGTCTTGTTTG
CCCTGGAAGCCATCGGTGTAATCCTGCCCCTGGAAAACGAGATGAAGACA
CCGCAGAAGTTCGGCGGCAGCTGTGGTGTGCTCAACGTATCCATGGTGCT
CATTGTGTTCCTCTACGTGGGCATGGGTCTCTTTGGTTATCTTAACTATG
GATCTGCGGTGCTTGGTTCCATCACCCTAAACATGCCGGAGCACCGAAGT
GCTTTCCATGTGCGTCAAGGCATGCTGGGCCTTTGCCAATTATATCACCC
ATGGAATGGCCTGCTATGGTGGCCATTGATTACACCTGGAATGACTATGT
TGGCCAAGCCGCCTGGGGCCCCCACCGAATGCCTGTTTAGGGATACCAAG
TGGAACTGCTTTGTTCGATACCTTCCTCTGGCGGGCCATCCACTGGAACG
TTTCACTCTCGTGGTTGGAGACATATGCCTTTTCGGTGTGGGTTGGAATA
TTCGGGGCACTCTATCTAC
FMO05384.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7888-RC | 2125 | CG7888-RC | 323..1473 | 30..1178 | 5270 | 97.8 | Plus |
| CG7888-RA | 2113 | CG7888-RA | 315..1461 | 34..1178 | 5265 | 97.8 | Plus |
| CG7888-RB | 1827 | CG7888-RB | 29..1175 | 34..1178 | 5265 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11058013..11058635 | 372..994 | 3100 | 99.8 | Plus |
| 3L | 28110227 | 3L | 11057766..11057952 | 187..373 | 935 | 100 | Plus |
| 3L | 28110227 | 3L | 11057555..11057708 | 34..187 | 770 | 100 | Plus |
| 3L | 28110227 | 3L | 11058701..11058830 | 1001..1133 | 300 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:54:29 has no hits.
FMO05384.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:49 Download gff for
FMO05384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7888-RC | 321..1428 | 27..1138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:20:54 Download gff for
FMO05384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7888-RC | 265..1372 | 27..1138 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:58 Download gff for
FMO05384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7888-RC | 321..1428 | 27..1138 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:58 Download gff for
FMO05384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11057552..11057707 | 28..186 | 98 | -> | Plus |
| 3L | 11057766..11057952 | 187..373 | 100 | -> | Plus |
| 3L | 11058015..11058640 | 374..1000 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:49 Download gff for
FMO05384.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11050652..11050807 | 28..186 | 98 | -> | Plus |
| arm_3L | 11050866..11051052 | 187..373 | 100 | -> | Plus |
| arm_3L | 11051115..11051740 | 374..1000 | 99 | -> | Plus |
