FMO05386.5prime Sequence
1210 bp (1012 high quality bases) assembled on 2008-08-22
> FMO05386.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGTGAATT
GCCGCCAAATTCAGTCGGCGTCTTTTTGGCGCTGCTCCTCTGCAGCTGCT
CTTTAATAGAACTGACCCGTGCGCAGTCCCCCATCCTGGAGATTTATCCC
AAACAAGAAGTCCAGCGCAAGCCAGTGGGCAAGCCCCTGATCCTCACCTG
CCGGCCCACAGTTCCCGAGCCGTCCCTGGTCGCCGATCTGCAATGGAAGG
ACAATCGGAACAACACCATTCTGCCCAAGCCGAATGGACGCAACCAGCCG
CCGATGTACACGGAAACGCTGCCCGGCGAAAGTTTGGCCCTGATGATTAC
CTCGCTGTCGGTGGAAATGGGCGGCAAGTACTACTGCACCGCCTCCTATG
CAAATACGGAGATCCTCGAGAAGGGCGTCACAATTAAAACTTACGTGGCC
ATCACCTGGACAAATGCCCCTGAGAATCAGTACCCCACTCTTGGCCAAGA
CTATGTGGTAATGTGCGAGGTAAAGGCCGATCCCAATCCAACAATCGACT
GGCTGCGCAACGGAGATCCGATCCGCACGACCAACGACAAGTATGTGGTG
CAAACCAATGGCCTGCTAATCCGAAATGTCCAGGAGAGCGATGAAGGCAT
CTACACTTGCCGTGCAGCCGTTATCGAAACTGGTGAGCTATTGGAACGCA
CCATTCGCGTGGAGGTCTTCATTCAGCCGGAGATCATATCGCTACCCACC
AATCTGGAGGCCGTCGAGGGCAAGCCGTTTGCAGCCAACTGCACAGCAAG
AGGCAAACCAGTACCGGAGATTAGTTGGATTCGAGATGCCACACAACTGA
ACGTGGCGACCGCCGATCGCTTCCAAGTGAATCCCCAAACTGGCCTGGTT
CCATCAGCTCCGTTAGCCAGGATGATTATGGCACATAAACATGCTTGGCC
AAGATAGGGCCGGTGTAGTGAACAAGAGACAAGCTGATGTTTGGTGCGTC
CGCAGATCTATGAGTTGTCATGTGACCGGGGCAGACAGAGATTGCAAACT
GCGTGCAAAGACGTCGGCACAGCGATACTTCGTCGTGGGACCAGGAGGAG
TACCGACGGGCGCAGGATGACATCCGCATATTGGACCGAATTCATGAGAG
AGCGGCGAGCCGTACTTGCATCCAGCAGCTCGGACAGGACTTACAGGTAT
ATTGCCGCAA
FMO05386.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:14:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fas2-RH | 3260 | CG3665-RH | 421..1533 | 40..1121 | 4755 | 96.8 | Plus |
| Fas2-RG | 3475 | CG3665-RG | 421..1533 | 40..1121 | 4755 | 96.8 | Plus |
| Fas2-RD | 3352 | CG3665-RD | 421..1533 | 40..1121 | 4755 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:14:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4143090..4143544 | 1018..570 | 1925 | 96.9 | Minus |
| X | 23542271 | X | 4154584..4154758 | 282..108 | 875 | 100 | Minus |
| X | 23542271 | X | 4149388..4149551 | 445..282 | 820 | 100 | Minus |
| X | 23542271 | X | 4143627..4143752 | 570..445 | 630 | 100 | Minus |
| X | 23542271 | X | 4203191..4203260 | 109..40 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:14:05 has no hits.
FMO05386.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:00:16 Download gff for
FMO05386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RE | 421..1426 | 40..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2010-07-30 09:23:41 Download gff for
FMO05386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RC | 418..1423 | 40..1041 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:46:08 Download gff for
FMO05386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fas2-RD | 421..1426 | 40..1041 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:46:08 Download gff for
FMO05386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4149388..4149551 | 282..445 | 100 | <- | Minus |
| X | 4154585..4154764 | 99..281 | 97 | -> | Minus |
| X | 4203202..4203260 | 40..98 | 100 | | Minus |
| X | 4143074..4143543 | 571..1032 | 97 | <- | Minus |
| X | 4143627..4143751 | 446..570 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:00:16 Download gff for
FMO05386.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4037107..4037576 | 571..1032 | 97 | <- | Minus |
| arm_X | 4037660..4037784 | 446..570 | 100 | <- | Minus |
| arm_X | 4043421..4043584 | 282..445 | 100 | <- | Minus |
| arm_X | 4048618..4048797 | 99..281 | 97 | -> | Minus |
| arm_X | 4097235..4097293 | 40..98 | 100 | | Minus |
