FMO05387.5prime Sequence
1214 bp (1028 high quality bases) assembled on 2008-08-22
> FMO05387.5prime
TTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGAATGCGGTT
CACACAGCGGACACCGCCCAATTCCGATTTGGCTTTCGAGCTGCCTCGTG
GCCATGTGCTTGGGCCTTCCGCTAGGAGCAGCTGTCCCCCAGGAAGCACC
TGCCTACTACTACGTTGGTTGCTACACGGCACGAACGGATCTTCTCCATG
AATCGGTGTACGCCAAGACACCGCAGACCTGCATCGAGATCTGCGAGCAT
CAGGGTCACCACTATGCCGTGCTGGCCTCCGAGAAGTGCTTCTGTGCAAA
TGTCCTGGAGCCGCAGGAGCAACAGGATGAACAGCTCTGCAACACTCGCT
GCCTGGCCAACAAAGCGCAGTATTGTGGCGGAGTTGGTGTGCACTCGTAC
TACTCCACCATACTGACCAAACAACCGGGTCCGCATCATCTAAGAATCTC
GAACAAAACGGAGAACAGCCTGACCCTTAGCTGGAATGCGTACGAGGCGA
GGAAACTACTCCTGGCCGGCGGCGCGGAGGCAGTGCTTCCCAACCAGCTA
CTGGACAACTTCCTGATCAAAGCTCAGGTCCTGAAGACCTACTCCTCGTT
GCCCGCCTTCCCGCAGCCTGAGTTTATGGTGCAGAGCACGGAAACGCAGT
TTGAACTCACAGACTTGCATCCCGCCACGCTGTACAACATATCCGTGAGA
GCCATGTGCAAGGATGCCCAAGTAGGTCAATCTGAATGCGGACAGGCCTC
GATAGAAGCCACCACGGAGGTGGGCCTTCCAAGTCCCGTGCCAGCACAGC
CGAAAATCCTCAGCCGGACTGACCGCACTGTAACCATCGAGTTGTCGCCC
ATTCGGAATGACAATGGACCGCTGAGCAAACTGCTCGTCATCGTGGATAC
GTGGACACGCCCTGAGTCAGCCATTCGATGCCCAGCTCCTGGCAGCTGGC
AGCAGCTCAACAGATGAGTGCCCTACTACTAGCCGCCGATTGACTACGAT
CGACGAGACATCGCACCCTGCGCTTGTGGTCGGCGATGCAGCGTACGACG
ATTTACATAGCGTGATCACGATGCATGTCCATCAGTCTCGATGGTGAACA
CTGAAGGCGTACAAGACAGTAAGTCCTGAACTCGACCGCATGGACTCTAG
ACACTTGATAGCACTTGAAGTATCTTGGGTTGCTACGGTACGTGTTATCT
CGTCTGCCTCGTCA
FMO05387.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wsck-RA | 2895 | CG31127-RA | 209..1246 | 37..1056 | 4735 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24629133..24629867 | 771..37 | 3675 | 100 | Minus |
| 3R | 32079331 | 3R | 24628884..24629074 | 955..768 | 805 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:36 has no hits.
FMO05387.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:51:29 Download gff for
FMO05387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 206..1246 | 31..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:11 Download gff for
FMO05387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 219..1259 | 31..1056 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:59 Download gff for
FMO05387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wsck-RA | 206..1246 | 31..1056 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:59 Download gff for
FMO05387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24628768..24629072 | 770..1056 | 93 | <- | Minus |
| 3R | 24629135..24629870 | 31..769 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:51:29 Download gff for
FMO05387.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20454490..20454794 | 770..1056 | 93 | <- | Minus |
| arm_3R | 20454857..20455592 | 31..769 | 99 | | Minus |
