FMO05388.5prime Sequence
1234 bp (1053 high quality bases) assembled on 2008-08-22
> FMO05388.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTACGAGAAA
ACATTAAACATAGGAACTGCGAAAGTTAATAATGCATATGAATGGCAAAA
AGTGAGATACAACAACAAACCCCAACCGACAACAACAGCAGCAGCTGCAG
TTAAACCTAAACCACAACAACAACAAGTTCAAAAACAGAAAAATGCAACA
AAAGCCGCGCCAGCAACAACTACAGCTGCAACAACAACAGCAACAGTGCC
ACCGTTAGCCGGCAACAGCGTTACCGTTAAGCAAGGCCCCAAAATCAAAT
TTGTTGGCAACGCGGCGCGCCGCCAATCGTTGGCCCATCAAATCAAGCGA
GCACATCGGCATTTACTGACCAGTGGCGGTCAGGATAAGCAGCCGCAGCA
AAAGCAAAAAACACAAGTGCAGCCGCAGTCGGGCAAAACAGTTGCCAAAC
CGAAACAGAGGCAGCAGAAACAATTGTTCAAAAGTGATAAGGCGAAGGAG
AAGTCCAGCAGGCAGCAGAGAAAGCGAGCCGGCACCAGGAGCACTCGCAA
TCCGAGGACGCAATCGGAATCTTCGGGCCTGTCATCCCGTTGGTGTTCCA
TCGAAGAGCAGTTGAACCTGCTGGACGACCTGCTCTACTACTGCGATGAG
GAGGCCGAACTGTATCTAGCCCAGCTGTACGAAAGGTTCGAGACACTCCG
GCGTAGCAGGAGTTCCTCGCCAGTGAGCGATTTCTGGAGCGATTCCGACA
TGGAGCACGATGACTCCAGCACCAGTGGCACTGGCAGCCATACAGCCAGC
AATACCAGTCTAGTTCCCGCCTCGCTGAAGCGTCGTGGCCACCAGCATCA
TCCGCGATTCTCGGGCACTCGCCGTCCCAATGTGCCCAATGTCCAGGAGA
TTCTGGCCGCACTCTATCGTGCGACTCAAAGAGCGCCCTGTCCAATCTGA
GAGAGAGACGCACCGGAGAGAGCACCACAGCAGCAGACGAGAGTGCTGCC
ACCCAGCAGAAGCACTTTAAGCCTGCCCCTCAGTGAATCGGTGACATTCC
TGGGCAGCACAGTCCCACGCCCACGACGAAGCAGCGTGCAAGATAGAGGG
GGTCAGTATCGCAGCAGCTTTATAGCTGAAGATGCAGCCCCCCGCAGCAA
CCACGTCCAAAGCAGAAAAGACCGAAAGGTTAAGTCAAGAATCGGCAATC
TGAAATCCGCAACGAAGAGAATCTTTCGGGTGAT
FMO05388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tm1-RH | 3054 | CG4898-RH | 278..1433 | 39..1169 | 5120 | 97.5 | Plus |
| Tm1-RC | 2651 | CG4898-RC | 242..1030 | 406..1169 | 3285 | 96.3 | Plus |
| Tm1-RI | 2501 | CG4898-RI | 92..880 | 406..1169 | 3285 | 96.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15288253..15289006 | 406..1141 | 2870 | 96 | Plus |
| 3R | 32079331 | 3R | 15287455..15287821 | 39..405 | 1835 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:25:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\BuT6 | 387 | Dbuz\BuT6 BUT6 387bp | 156..195 | 428..389 | 119 | 77.5 | Minus |
FMO05388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:47 Download gff for
FMO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..1437 | 39..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:13 Download gff for
FMO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..1437 | 39..1176 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:38 Download gff for
FMO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tm1-RH | 278..1437 | 39..1176 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:38 Download gff for
FMO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15287455..15287821 | 39..405 | 100 | -> | Plus |
| 3R | 15288253..15289045 | 406..1176 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:47 Download gff for
FMO05388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11113177..11113543 | 39..405 | 100 | -> | Plus |
| arm_3R | 11113975..11114767 | 406..1176 | 95 | | Plus |
