FMO05389.5prime Sequence
1238 bp (1036 high quality bases) assembled on 2008-08-22
> FMO05389.5prime
TCGTATAGCATACATTATACGAAGTTATCAGTCGACATGTGGCGAGTGAT
TCAACTGCGCGCAACAATCGCGCATCCGTTCACCAGACAACGTCATAGTC
GAGTGATTGCCATTCGGCGAGAGGATCAGTCGGTGTGGGAGCGACGAGCT
CCGTTTGGACCAACCCACGTCCAGAAGTTGGTCAAGCAGAATGTCAAGGT
CATAGTGCAGCCGTCCAATCGTCGTGCCTACCCCATGCAGGCCTACATGC
AGGCTGGAGCTCATATTCAGGAGGACATCAGTGATGCTTCGGTGATATTC
GGAGTGAAACAGGTGCCCATAGATGCACTGATTCCTGGGAAGACGTACTG
CTTCTTTTCACACACGATTAAAGCGCAGGAATCAAATATGCCGCTTCTGG
ATGCTATTTTGGAGAAGAAAATTCGGCTCATCGACTATGAGCGAATCATC
GACGAACGCGGAGCACGACAGGTGGCCTTTGGCAAATATGCCGGAGTGGC
TGGCATGGTGAACATCCTGCACGGCATTGGACTGCGTCTTTTGGCCCTGG
GACATCATACACCATTCATGCACATTGGACCCGCTCATAACTATCGCAAT
TCCTCGATGGCTCGCCAGGCAATCCGGGATTGTGGCTACGAGATCTCGCT
TGGCATGATGCCCAAGTCCATTGGACCACTTACATTTGTGTTCACTGGCT
CTGGAAATGTTTCCCAAGGTGCCCAGGAGGTGTTCTCCGAGCTGCCCATT
GAGTATGTTCCACCGGAGATGCTACGCAAGGTGGCCGACATGGAAATCAA
AATAAGCTTTACGGCTGCGAGGTGAGCCGATCGGATCATCTGGAGCGTCG
TGAGGGCGGCGGATTTGATGCCAAGGAATACGATGAGTTCCCCGACGATA
CATCTCCACCTTTAGCACGAAGATAGCTCCGTACGCATCGGTTATTGTAA
CGGCATCTACTGGCGTAGGCAGTCCCAGTTGATCAGCATTCCGGATGCCA
GATCTGCTACGTCCGGCAACACTCCCTGCTGCCGACGAGCAGTAGTCGCT
TTGCCAATCGCATGCTGGCAATTGCGACTTCCGCTGATCCCGGGGTCCAT
GGTAAGACCGAGTGCACACCATCGCACCTCCATTGCTGACATGCGGACGG
AATAGTATCAAAGCCTTTAGGACGGATACTGTCAATGAATGCCTACATGC
CGAGAACTCCAGCGAATGTTTTGGGAAGCCGTTTCGAT
FMO05389.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| LKR-RB | 3495 | CG7144-RB | 124..1249 | 35..1134 | 4910 | 96.9 | Plus |
| LKR-RA | 3264 | CG7144-RA | 124..1249 | 35..1134 | 4910 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7794156..7794528 | 788..416 | 1865 | 100 | Minus |
| 2L | 23513712 | 2L | 7793829..7794083 | 1041..796 | 880 | 96.1 | Minus |
| 2L | 23513712 | 2L | 7794592..7794771 | 417..238 | 855 | 98.3 | Minus |
| 2L | 23513712 | 2L | 7795509..7795657 | 241..93 | 730 | 99.3 | Minus |
| 2L | 23513712 | 2L | 7795775..7795836 | 96..35 | 310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:05 has no hits.
FMO05389.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:01:45 Download gff for
FMO05389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 124..1210 | 35..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:15 Download gff for
FMO05389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7144-RA | 123..1209 | 35..1100 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:07 Download gff for
FMO05389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| LKR-RA | 124..1210 | 35..1100 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:07 Download gff for
FMO05389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7794592..7794768 | 241..417 | 98 | <- | Minus |
| 2L | 7795510..7795653 | 97..240 | 100 | <- | Minus |
| 2L | 7794148..7794526 | 418..795 | 99 | <- | Minus |
| 2L | 7793759..7794083 | 796..1100 | 93 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:01:45 Download gff for
FMO05389.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7795510..7795653 | 97..240 | 100 | <- | Minus |
| arm_2L | 7793759..7794083 | 796..1100 | 93 | <- | Minus |
| arm_2L | 7794148..7794526 | 418..795 | 99 | <- | Minus |
| arm_2L | 7794592..7794768 | 241..417 | 98 | <- | Minus |
