FMO05390.5prime Sequence
1266 bp (1079 high quality bases) assembled on 2008-08-22
> FMO05390.5prime
ACTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGGCAACAC
CCAAGCCCGACAACTGGAGAACCGCCAAGTGCCGAATCGGAGGAGCAGCA
TTTTGTGGAACTTTCGGTACTCGAACACAGTGCGTCGTCGCGAAGATTTG
GCCGTAATGGTGCACAACTCTAGGATGAGCATAAGCGAGTGGCTGGACCT
TCTGGAGCTGCAGCAGTACGAAGGAAACCTACAGGAGTTCAGCACCGTGG
ACGATGTGGTGGACATCACGGACAAGGAGCTGAAGCAATTTGGCGTGCGC
GGTGCCCATCGCCAGAGGATGGTCAATAGTTTGCTGGGTGTTCGTGCCAA
GCGAAGGCAGTCCATGAATCTGGAAGCAATGAGCAGTGCGCCGCGAGCAG
TGCCACGGCGCAAGAAATCGTGTCCATTGGTGTATCTGGGTGAGAATCCC
CAAGATATGGCGGGAAGCGGCGATAGCGGACCCGGCGTGATTACCACCAA
GAGTGGCAAGGTCCTGAAGCAACTAACCTTTGATGAGACCTCCACCATCT
ACGAGGAACTAAGGCCGCGCTCCAAGTGCAACAGTCCCCATTGGGCCATC
GAAGACAGCAGGATGGAGGGCTATGGGAGCAGCAATGCCACCACTCCGCT
GGCCACCGCCCAGCCCAGTCCCAGCGAGCAACAGGAGGCCATCGCCCTGA
AGAAGGCGCTCGAGTGGGAGCTGAGTTTGGACGCCAGGGAGCTGCGTTCG
CACGCCTGGTACCACGGCGCACTGCCACGCCAGCGGGCCGAGGAGATCGT
GCAGCGCGAGGGCGACTTCCTGGTCCGCGACTGCGCCTCCCAGCCGGACA
ACTATGTGCTCAGCTGCCGGAGCAAAGCGGCTGTACTGCACTTCGTACTT
AATAAGTTGGTGCTTCAACCGGAGACGGTTTACGAACGTGTGCAGTACCA
GTTCGAGGAGGATGCCTTTGATACGGTGCCCGACCTATTACCTTCTACGT
GGGATCCGGCAAGCCCATCTCGTCAGCATCGGGAGCGCTCATTCAGTTTC
CCTGCAATCGCACCTTATCCGCTTTTCTTTTTACGGCCACAAGAATTGTG
GCACCAACCTGCACACGCCGATGTCTGGCGGTTGCAGTCTGAGTCTCTCT
GAACTCGCGATATGGCGCATTGTTGCATGGGACAGATTGAGCTACTTGCT
CGAACCGACGACGACAGACTACGCTTGCTGTGCTTGTTTCATCATGTTCC
CATGTTTCTCGCCGAG
FMO05390.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9098-RA | 3481 | CG9098-RA | 101..1222 | 38..1158 | 5060 | 97.3 | Plus |
| CG9098-RC | 3470 | CG9098-RC | 101..1211 | 38..1158 | 4885 | 96.4 | Plus |
| CG9098-RB | 2998 | CG9098-RB | 270..880 | 549..1158 | 2595 | 96.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6010309..6010670 | 910..549 | 1735 | 98.6 | Minus |
| 2L | 23513712 | 2L | 6011555..6011728 | 548..375 | 810 | 97.7 | Minus |
| 2L | 23513712 | 2L | 6011783..6011937 | 376..222 | 745 | 98.7 | Minus |
| 2L | 23513712 | 2L | 6010025..6010242 | 1123..905 | 740 | 92.3 | Minus |
| 2L | 23513712 | 2L | 6011985..6012111 | 224..98 | 635 | 100 | Minus |
| 2L | 23513712 | 2L | 6012178..6012238 | 98..38 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:36:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2858..2889 | 722..753 | 115 | 84.4 | Plus |
FMO05390.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:31:52 Download gff for
FMO05390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 101..1237 | 38..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:16 Download gff for
FMO05390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 101..1237 | 38..1172 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:43 Download gff for
FMO05390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9098-RA | 101..1237 | 38..1172 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:43 Download gff for
FMO05390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6010313..6010670 | 549..906 | 98 | <- | Minus |
| 2L | 6011555..6011726 | 377..548 | 97 | <- | Minus |
| 2L | 6011783..6011935 | 224..376 | 98 | <- | Minus |
| 2L | 6011986..6012111 | 98..223 | 100 | <- | Minus |
| 2L | 6012179..6012246 | 32..97 | 92 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:31:52 Download gff for
FMO05390.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6010313..6010670 | 549..906 | 98 | <- | Minus |
| arm_2L | 6011555..6011726 | 377..548 | 97 | <- | Minus |
| arm_2L | 6011783..6011935 | 224..376 | 98 | <- | Minus |
| arm_2L | 6011986..6012111 | 98..223 | 100 | <- | Minus |
| arm_2L | 6012179..6012246 | 32..97 | 92 | <- | Minus |
