FMO05391.5prime Sequence
1281 bp (1099 high quality bases) assembled on 2008-08-22
> FMO05391.5prime
TGCAACTAAAGGGGGGATCTCGAGGGATCCATAACTTCGTATAGCATACA
TTATACGAAGTTATCAGTCGACATGCATAGAGCCCACACAGCCTTCAGCC
TGGCCTTGTCGCCGATGGCGCACAAGAACTTCGCCACATGGCTGCTCAAG
AGCAGCAGCAGTCAGCAGATGGCCAAGGTAACTGCAGCGGCCGCTGTGCG
CACCTACAACTCCGCAGCTGCCGAACCTTTTGCCAACGGCAGCACCGCCT
CCTACGTGGAGGAGATGTACAACGCCTGGCTTCGGGATCCCACTTCCGTG
CACACCTCCTGGGACGCGTACTTCCGCAGCAACAGCTACGTTAGCCCGCC
CAACTTGGCGCCCGTGCAGGCCAACACTCTGCCGCTGACCGCCTTCAACT
TTGGAGGAGCCGTCGCCGGCGCTGCGCCCGACTCCAAGACCATTGACGAC
CATCTGGCCGTCCAGGCCATCATCAGGAGCTACCAGATTCGAGGACATAA
TATTGCTCACCTCGATCCACTTGAAATTAATACACCAGAATTGCCTGGCA
ACTCCTCGACGAAATCCATTTACGCTAATTTCAGTTTTGGCGAGCAGGAC
ATGGATCGCCAGTTCAAGCTGCCCAGCACTACCTTCATCGGAGGCGATGA
GGCTTCGTTGCCCCTAAAGGAAATCCTGAACCGCCTGGAGAATGTCTACT
GTAATAAGATTGGCGTGGAGTTCATGTTCATCAACTCTCTGGAGCAATGC
AACTGGATCCGCAAGCGTTTTGAGACCCCCGGCGTCCTTAACTTCTCGCC
CGAGGAGAAGCGTCTGATCCTGGCCCGTTTGACCCGTGCCACCGGCTTTG
AGGCTTTCCTGGCCAAGAAGTACTCTTCTGAGAAACGTTTCGGTCTGGAG
GGTTGCGAGATCATGATCCCAGCCCTGAAGGAGATCATCGACGTATCAAC
GGAGTTGGGAGTGGAGTCGGTCATCATGGGCATGCCCCATCGTGACGTCT
TAACACCTTGGCCAATGTATGCCGCAGCCCTTGACCAGATCTTCACCCAG
TCCGCTGGACTGGAGCTGCTGATGATGGCTCTGGTGATGTCAAGTACCAT
CCTCGGTACATAATCGAGCGATTGACCGCGTTACAAACAGAAACATCCCG
CCTGCTGCCTGGCCACCCGTTCCATCTGGGAGGCTGTGAATCCGTGGGGC
AGGCGACCGTGCCGAACTCACATGCCACGAAGCAGAAGTAGTCCATGGAA
CCGGGAGTGCGCCTCTGTGGCAAGTCCTCCC
FMO05391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nc73EF-RJ | 4376 | CG11661-RJ | 460..1597 | 73..1203 | 5275 | 98.2 | Plus |
| Nc73EF-RI | 4028 | CG11661-RI | 112..1249 | 73..1203 | 5275 | 98.2 | Plus |
| Nc73EF-RA | 4381 | CG11661-RA | 112..1249 | 73..1203 | 5275 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16962476..16962888 | 669..1077 | 1850 | 98.8 | Plus |
| 3L | 28110227 | 3L | 16959705..16959884 | 307..486 | 900 | 100 | Plus |
| 3L | 28110227 | 3L | 16959281..16959422 | 165..306 | 710 | 100 | Plus |
| 3L | 28110227 | 3L | 16961498..16961603 | 485..590 | 530 | 100 | Plus |
| 3L | 28110227 | 3L | 16959121..16959216 | 73..168 | 480 | 100 | Plus |
| 3L | 28110227 | 3L | 16962334..16962414 | 589..669 | 405 | 100 | Plus |
| 3L | 28110227 | 3L | 16962943..16963015 | 1077..1148 | 190 | 93.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:02 has no hits.
FMO05391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:11:04 Download gff for
FMO05391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RA | 109..1198 | 73..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:18 Download gff for
FMO05391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RB | 73..1162 | 73..1157 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:28:37 Download gff for
FMO05391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nc73EF-RA | 112..1201 | 73..1157 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:28:37 Download gff for
FMO05391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16959121..16959216 | 73..168 | 100 | -> | Plus |
| 3L | 16959285..16959422 | 169..306 | 100 | -> | Plus |
| 3L | 16959705..16959884 | 307..486 | 100 | -> | Plus |
| 3L | 16961500..16961602 | 487..589 | 100 | -> | Plus |
| 3L | 16962335..16962413 | 590..668 | 100 | -> | Plus |
| 3L | 16962476..16962887 | 669..1076 | 98 | -> | Plus |
| 3L | 16962943..16963024 | 1077..1157 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:11:04 Download gff for
FMO05391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16955435..16955513 | 590..668 | 100 | -> | Plus |
| arm_3L | 16952221..16952316 | 73..168 | 100 | -> | Plus |
| arm_3L | 16952385..16952522 | 169..306 | 100 | -> | Plus |
| arm_3L | 16952805..16952984 | 307..486 | 100 | -> | Plus |
| arm_3L | 16954600..16954702 | 487..589 | 100 | -> | Plus |
| arm_3L | 16956043..16956124 | 1077..1157 | 91 | | Plus |
| arm_3L | 16955576..16955987 | 669..1076 | 98 | -> | Plus |
