FMO05392.5prime Sequence
1244 bp (1051 high quality bases) assembled on 2008-08-22
> FMO05392.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGAATGAAACAGAG
TGCGAGGATCTCATCAAATCTGTGAAATGGACGGAACCAGCCAATCTGAT
CTCCCTGGCCGTACTCGAGTTCATCAACGTTCTGGTCATCGGTGGCAACT
GCCTCGTGATTGCCGCCGTCTTCTGTTCGAATAAGTTGAGGAGTGTGACG
AACTTCTTTATTGTCAACCTAGCTGTGGCCGATCTTCTGGTGGGTTTGGC
CGTCCTACCCTTCTCAGCCACCTGGGAAGTCTTCAAGGTTTGGATATTCG
GCGATCTCTGGTGCCGCATTTGGCTGGCTGTCGATGTCTGGATGTGCACG
GCATCGATCCTGAATCTGTGTGCCATATCACTGGACCGCTATGTGGCGGT
CACACGACCCGTCACCTACCCAAGCATAATGTCCACGAAGAAGGCCAAGT
CCTTAATCGCCGGCATTTGGGTACTCTCATTTTTTATTTGCTTTCCGCCG
CTAGTCGGCTGGAAGGATCAAAAGGCGGTTATACAGCCGACCTATCCAAA
GGGAAACCATACGCTTTACTACACCACCACGATGTCAAGCTCGGAGGATG
GTCAACTAGGGTTAGATAGCATTAAGGACCAGGGCGAGGCATCCTTGCCT
CCATCCCCGCCCCATATCGGCAACGGCAACGCCTACAATCCCTACGATCC
CGGTTTCGCACCCATCGATGGATCCGCGGAGATTCGGATTGCGGCCATTG
ACTCGACCAGTACTTCAACAACCGCAACCACCACGACGACAGCGTCCAGC
TCGAGCACCACGGAAACGGAAATGGACCTCGATCTACTGAACGCACCGCC
GCAGAACAGACCCCAAACAATTTCCCGGCAGTTGTCCGTGGAAGTGCGAG
CTGACCAACGATCGGGGTTATGTCCTGTACTCGCCCTGGCTCATTCTATA
TACCCATGTTCGTGATGCTCTTCTCTACTGGCGCATCTACCGGGCTGCGT
GAAGACGACGAGAGCATCAACCAGGCTTCAGACACCAAGTTCAGGGCATC
GTTCTCGCTTCGAGAAGCAACGCCTCACATTGCGCATACTTGAAGGACGA
GGATCAAACAGCAGACTCCATGCCAGCAACGGGGCACTCAGAGCACCACC
ACCTGGCACCCCTTCCGGAAGGGTTCAATAGCCATTGGCAGACTCAGCAG
AATCAGATCCGTGTCCTCACCTCTCGCGAAACATATCGGACCTG
FMO05392.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oamb-RF | 4098 | CG3856-RF | 996..2130 | 35..1153 | 5160 | 97.9 | Plus |
| Oamb-RG | 4098 | CG3856-RG | 996..2130 | 35..1153 | 5160 | 97.9 | Plus |
| Oamb-RD | 4098 | CG3856-RD | 996..2130 | 35..1153 | 5160 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20698353..20698859 | 1025..523 | 2210 | 98.4 | Minus |
| 3R | 32079331 | 3R | 20700592..20700846 | 289..35 | 1275 | 100 | Minus |
| 3R | 32079331 | 3R | 20700094..20700333 | 525..286 | 1200 | 100 | Minus |
| 3R | 32079331 | 3R | 20690986..20691092 | 1153..1051 | 275 | 92.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:48:37 has no hits.
FMO05392.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:14:36 Download gff for
FMO05392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RC | 531..1672 | 32..1161 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:19 Download gff for
FMO05392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RB | 957..1976 | 32..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:38 Download gff for
FMO05392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oamb-RD | 993..2134 | 32..1161 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:38 Download gff for
FMO05392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20698337..20698857 | 525..1038 | 97 | <- | Minus |
| 3R | 20700095..20700331 | 288..524 | 100 | <- | Minus |
| 3R | 20700594..20700849 | 32..287 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:14:36 Download gff for
FMO05392.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16524059..16524579 | 525..1038 | 97 | <- | Minus |
| arm_3R | 16525817..16526053 | 288..524 | 100 | <- | Minus |
| arm_3R | 16526316..16526571 | 32..287 | 99 | | Minus |
