FMO05393.5prime Sequence
1277 bp (1073 high quality bases) assembled on 2008-08-22
> FMO05393.5prime
CGTATAGCATACATTATACGAAGTTATCAGTCGACATGGTCGAGGGTCAG
ACAGCCGTTCAGCAGCAGCAGCAGCAACCATCCGGCGCGGGCGGTGCCAG
CGGCGTGGGAAGCACCACCGGATCCGCTGGAGGACCGGCTACGGCCAACA
ATGTGACCAACAGTCAGGCCCAAACCAATGGGGGCACCACTGCGACCACG
ACTGCCGCAGCGGGTGCCGGATCCACGACAAATGCGGCCGTCGGCCAGGC
CACAGCAAACAATGCTGCGAGCAACAACAACAATAATAATAATAATACCA
ACAACAACAATAACAATAACGCCACTGCAAACAACAACAACAATAATGAG
CCAGACCCCAAGACCAATTTGATTGTGAACTACTTGCCACAGACGATGTC
GCAGGACGAGATCCGTTCGTTGTTCGTCAGTTTTGGCGAGGTGGAGAGCT
GCAAGTTGATACGCGACAAGGTGACAGGACAAAGTCTGGGCTACGGATTC
GTGAACTACGTGAAGCAGGAGGATGCGGAAAAGGCAATCAACGCATTGAA
CGGCCTCAGGCTGCAGAACAAAACCATCAAGGTCTCCATTGCACGCCCCA
GCTCCGAGAGCATCAAGGGTGCCAATCTCTATGTATCGGGTCTTCCAAAA
AATATGACACAGTCGGATTTGGAATCATTGTTCAGTCCATACGGCAAGAT
CATAACCTCGCGTATTCTTTGTGATAATATCACTGGTCTCTCCAAGGGCG
TTGGCTTTATACGCTTCGATCAGCGATTTGAGGCCGACCGGGCCATTAAA
GAGCTGAACGGCACCACTCCGAAGAATTCCACCGAACCCATAACCGTCAA
GTTCGCCAACAATCCTAGCAGCAATAAGAACAGCATGCAGCCTTTGGCAG
CCTATATAGCGCCCCAAATACGCGTGGCGGACGAGCATTTCCGGGCCAAC
GCTGCTGCCGGAGCGGCAGCCGCCGCGCTGCAGCTGCCATCCACCCCAAT
GCGGGCCGATACAGCTCTGTAATCTCGCGATTATTCACCGTTGACCAGTG
ACCTGATCACTAATGGCATGATCCAAGGCCACCCATGCCAGCTTCCGGCT
GGGGGCATTTTTCGTCTACACTGCGCCGGTATACCGAGGAGACGGGGCTG
TGGGCCCACTGTTGGACCCTACGGATCATGTCAATCCTGTCTTAAGGGTA
TTCCGGTATCTGCAGACACAAGTCAGGGCCTTGGGCCTTCTCTCACAGTG
ACAGATTACCGAAGTGTGTCTCTGTCA
FMO05393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:39:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rbp9-RH | 3478 | CG3151-RH | 694..1833 | 36..1175 | 5225 | 97.8 | Plus |
| Rbp9-RJ | 3390 | CG3151-RJ | 606..1745 | 36..1175 | 5225 | 97.8 | Plus |
| Rbp9-RG | 6976 | CG3151-RG | 609..1748 | 36..1175 | 5225 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2961231..2961673 | 36..478 | 2215 | 100 | Plus |
| 2L | 23513712 | 2L | 2961735..2961998 | 474..737 | 1320 | 100 | Plus |
| 2L | 23513712 | 2L | 2962585..2962865 | 735..1014 | 1260 | 98.9 | Plus |
| 2L | 23513712 | 2L | 2962951..2963018 | 1011..1079 | 295 | 98.6 | Plus |
| X | 23542271 | X | 12943512..12943647 | 735..870 | 215 | 77.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:39:40 has no hits.
FMO05393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:38 Download gff for
FMO05393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp9-RG | 602..1727 | 27..1153 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:21 Download gff for
FMO05393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp9-RI | 687..1390 | 27..732 | 99 | <- | Plus |
| Rbp9-RI | 1407..1827 | 733..1153 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:10:41 Download gff for
FMO05393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rbp9-RG | 602..1727 | 27..1153 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:10:41 Download gff for
FMO05393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2961224..2961672 | 27..477 | 99 | -> | Plus |
| 2L | 2961739..2961996 | 478..735 | 100 | -> | Plus |
| 2L | 2962586..2962865 | 736..1014 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:38 Download gff for
FMO05393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2961224..2961672 | 27..477 | 99 | -> | Plus |
| arm_2L | 2961739..2961996 | 478..735 | 100 | -> | Plus |
| arm_2L | 2962586..2962865 | 736..1014 | 98 | -> | Plus |
