FMO05394.5prime Sequence
1211 bp (1020 high quality bases) assembled on 2008-08-22
> FMO05394.5prime
CTTCGTATAGCATACATTATACGAAGTTATCAGTCGACATGGCAACTTTT
CAAATGGAAATGCGCCAGCAGCAGCATCAACGAACGAATTTAAGGCAACG
AGCGGCGGCAGTGGCAACATCCAAAGCCAGGCGACAACGACAACATCATC
TGCAGCCGGAGTCCACTGACTCACCGCCATACAGCACGGATTGCATAAGA
CTGTGGCCAGGATGTGGCCCAACCACCGCTGACAGGGTCAACGGCAACCC
ACCCACCTGCAACAACACCAGCAGCAGCGACATAGGCGGCAACATCAGCG
GCAACACGAGCAACCGCATCAGCTGTTGCAGCTGCAACTTCGGACGGCAA
AGAGCGCTGATTATGCTCAGCATGCTCGTCGTTGTCATGGCTCTGATGTC
CGGCAATGGAGTTTATGCCGCTCAGCGCGACTCCTACAACTCAAAGGATA
TGAGTAGCAGTAACAATGCCCTGCCCAACGAAGGAGTGGGAGGATCGGCA
GCTGGAGCGGGCGAGGCGGCTGCTCCCGGTCCCACTGGTATCGACGGAAG
CGGAAGCGGCAACAATAGCAGCGGAAATAACAAAAACGGCCATCCCGCTG
CCGGATCAGGCGCTGCCTCCGAATCCGCTGCGCTGACTACCGATGCCAGT
CGCAGCTCCGTTGGCGGCGCAACCACCATCACGGGAATCCCGAGCAGCAG
CCTACACAAGGCCAGCAGCGCCAGCAGCAACACATTCTCCTCCCAGCTTG
CATCCGGCTTCCATCGCAACAGCATCGATCTGGAGGAGGCCCGCAATGCG
GGTCCCTATTTCGACAAGGCCTTCTCCAAGAACGTCACCGCCCTGCTGGG
CAAGACGGCCTATTTGAACTGCCGAGTCAGAATCTGGGCATAAGACGATG
TTGCTTCAGGTGTCGTGGGTGCGACATCGGACATACATTTGCTGACAGTT
GGCGATCACATACACGTCGATCGCGCTTTCGGGCAATCATCAGCGCAACT
GAGACTGATGCTGCAATCAGTACCGCAACATCGAGATCGCATCTACGATG
CAGATCGACTAACCCCAATTGATTCATTATCACTGATGTCGTGACCTGAC
GATCATCGTGCACGAATTGTTAGATGTTCATAACTTACTGTAACTACAAT
TCGACGAGCTATTCCTGGACTAATGGCTCCCTCACGAAATTCTCACATGT
ATTCGCGCACT
FMO05394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dpr9-RB | 4826 | CG33485-RB | 764..1815 | 39..1067 | 4690 | 97.7 | Plus |
| dpr9-RA | 3272 | CG33485-RA | 764..1815 | 39..1067 | 4690 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15066604..15067085 | 890..410 | 2360 | 99.8 | Minus |
| 3R | 32079331 | 3R | 15071452..15071824 | 411..39 | 1865 | 100 | Minus |
| 3R | 32079331 | 3R | 15063286..15063343 | 953..897 | 240 | 98.3 | Minus |
Blast to na_te.dros performed 2014-11-28 19:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3269..3378 | 42..148 | 164 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1587 | 239..299 | 134 | 68.9 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8939..8982 | 254..297 | 130 | 77.3 | Plus |
| BS | 5142 | BS BS 5142bp | 2045..2121 | 245..321 | 124 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2368 | 669..732 | 119 | 67.2 | Plus |
FMO05394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:43 Download gff for
FMO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr9-RA | 763..1794 | 39..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-08-22 17:21:06 Download gff for
FMO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr9-RA | 763..1794 | 39..1051 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:30 Download gff for
FMO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dpr9-RA | 764..1795 | 39..1051 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:30 Download gff for
FMO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15066596..15067083 | 412..897 | 99 | <- | Minus |
| 3R | 15071452..15071824 | 39..411 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:43 Download gff for
FMO05394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10892318..10892805 | 412..897 | 99 | <- | Minus |
| arm_3R | 10897174..10897546 | 39..411 | 100 | | Minus |
