Clone FMO05404 Report

Search the DGRC for FMO05404

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:54
Well:4
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG6272-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05404.5prime Sequence

365 bp (365 high quality bases) assembled on 2008-08-25

> FMO05404.5prime
CAGTCGACATGCCGGCCAAAAAGAGAACTGCCGCGTCGACCAGCAAAAAT
AGCGATTCGCCATTAAGTCCGCACACAGACGATCCAGCGTACAAAGAAAA
AAGAAAGAAAAACAATGAGGCTGTTCAGCGCACACGCGAAAAGACCAAGA
AATCGGCCGAGGAACGTAAGAAACGCATCGATGATTTGAGGAAGCAAAAC
GATGCTCTTAAGGTTCAGATCGAGACGAGTGAAAAACATATATCTACGCT
TAGAGATCTGATCATTCAGGGTGAGAAAACGGAGGACGGCCATCGAATCA
TCCAGGAGATTCTCGCTGAACCAGATCCCGATCCCAAGGACAATGACGCA
AGCTTTCTAGACCAT

FMO05404.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6272-RB 614 CG6272-RB 77..415 9..347 1695 100 Plus
CG6272-RA 543 CG6272-RA 77..415 9..347 1695 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 11097645..11097874 347..118 1150 100 Minus
3L 28110227 3L 11097999..11098110 120..9 560 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:10:02 has no hits.

FMO05404.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:46 Download gff for FMO05404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..418 9..351 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:45 Download gff for FMO05404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..418 9..351 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:41:47 Download gff for FMO05404.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6272-RA 77..418 9..351 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:41:47 Download gff for FMO05404.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 11097642..11097872 120..351 99 <- Minus
3L 11098000..11098110 9..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:46 Download gff for FMO05404.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 11090742..11090972 120..351 99 <- Minus
arm_3L 11091100..11091210 9..119 100   Minus