FMO05405.5prime Sequence
622 bp (322 high quality bases) assembled on 2008-08-25
> FMO05405.5prime
CAGTCGACATGATGTCGTCGGATCAACAGTTCTTTCTAAAATGGAACGAT
TTTCAAACGAATATGGTGACCTCGTTCCGTCACCTGCGCGACGAGAAGAG
CTTCACAGATGTAACACTCGCCTGCGAGGGCCAAACCTGCAAAGCCCACA
AAATGGTGCTTTCCGCTTGCAGTCCCTACTTTAAAGCGCTACTGGAGGAG
AACCCATCGAAGCATCCGATCATTATCCTGAAAGATGTCTCCTACATTCA
CCTACAGGCTATACTGGAGTTTCATGTACGCCGGGTGAGGTGAACGTGTC
CCAGGAACAATTGCCCAGCATTTCTTAAAACCGCCCGATCGCCCTAAAGT
GAAAGGCCTCGCAAAAAACCCCATTTCGATAAACGGGGAAGGGGAAACCT
TTCTAAACATTCGTTTGGGGGCGGGGGCCCAGTAAGGGGCCAAATCTAAA
CCTAAGCATATCCTAACCCCACCTGCCAAGAAAAACCGGGTCTGGATAGG
GCTGGGATTCCCCCCATAAAAAACCCCGGGGGGACCCGAGTTTTGAAAAC
CGAAGGGGTTTTGGGGGTTTTCGGGTTTTCCAGAGAGCCACGGTCTCTTA
CATTTCCCCCCCGCCCCCCTCA
FMO05405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lolal-RH | 958 | CG5738-RH | 271..651 | 8..392 | 1675 | 96.4 | Plus |
| lolal-RG | 1005 | CG5738-RG | 318..698 | 8..392 | 1675 | 96.4 | Plus |
| lolal-RF | 1384 | CG5738-RF | 284..664 | 8..392 | 1675 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18155152..18155344 | 392..196 | 635 | 92.9 | Minus |
| 2R | 25286936 | 2R | 18155890..18155994 | 112..8 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 18155404..18155491 | 198..111 | 440 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:57:35 has no hits.
FMO05405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:05 Download gff for
FMO05405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RE | 380..757 | 1..383 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:46 Download gff for
FMO05405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RD | 301..678 | 1..383 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:53 Download gff for
FMO05405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lolal-RF | 278..655 | 1..383 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:53 Download gff for
FMO05405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18155161..18155342 | 198..383 | 93 | <- | Minus |
| 2R | 18155405..18155491 | 111..197 | 100 | <- | Minus |
| 2R | 18155892..18156000 | 1..110 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:05 Download gff for
FMO05405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14042666..14042847 | 198..383 | 93 | <- | Minus |
| arm_2R | 14042910..14042996 | 111..197 | 100 | <- | Minus |
| arm_2R | 14043397..14043505 | 1..110 | 96 | | Minus |
