Clone FMO05406 Report

Search the DGRC for FMO05406

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:54
Well:6
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG2611-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05406.5prime Sequence

422 bp (422 high quality bases) assembled on 2008-08-25

> FMO05406.5prime
CAGTCGACATGGAGCCCACCAATTCGGAGTCGCGGCACCGCCTAAATGGA
GGGGGCAGGAGTTCCGCGCCAGCAGGCTCCGGAGAGTACATCAAGGTGGT
GGAGTCCCAATGCGAGACCGATGGATTCGTTAATGAACAGTGGACGGAAC
CGGCGATGCCAGGTCCAGTGCCTTGGAAGACCATTATTATCATTCTTTTG
CTGTTTATCGGTGGCATTGTTTGCATCGCCTTTGCCACCTTAAACTGGGT
GACGGACACGAGCCGGGAGCGATCGGATCGGGTGTGGGCGTTGGGTATCA
TCGGGGCACTGACCTTCATCCCGGGAAGCTACTATGTGTACGTGCTCTTC
TGCATAATGCTCAACCGCAACGGATTCACCATGGACGAGATACGAAGACT
CGGCGCAAGCTTTCTAGACCAT

FMO05406.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:01:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2611-RA 634 CG2611-RA 63..458 9..404 1980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:01:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20650251..20650462 9..220 1060 100 Plus
2L 23513712 2L 20650537..20650722 219..404 930 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:01:34 has no hits.

FMO05406.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:23 Download gff for FMO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..462 1..408 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:48 Download gff for FMO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 53..457 1..408 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:49:09 Download gff for FMO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2611-RA 58..462 1..408 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:49:09 Download gff for FMO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20650537..20650729 219..409 98 -> Plus
2L 20650246..20650460 1..218 98 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:23 Download gff for FMO05406.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20650537..20650729 219..409 98 -> Plus
arm_2L 20650246..20650460 1..218 98 -> Plus