Clone FMO05407 Report

Search the DGRC for FMO05407

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:54
Well:7
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTaf13-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05407.5prime Sequence

434 bp (434 high quality bases) assembled on 2008-08-25

> FMO05407.5prime
CAGTCGACATGGCCTCAAATAGCATGCCAGAGGAGAATTTCGAGGGCGGT
GATTTCAACTTTGATGACGACGCGGAGGATGACCAATTTGTGGCTACCAA
CTCAGGACGAAAGCGCCTATTCAGCAAGGAGCTGCGCTGCATGATGTTCG
GATTCGGAGACGACAAAAATCCATACACGGAAACCGTAGATCTGTTGGAA
GACCTGGTCATTGAGTATATAGCTGAGACCACTCACCGGGCAATGGAGAT
CGGTCGAACAGGCCGTGTTCAAGTCGAAGACATTATCTTCCTGGTGCGCA
AAGATCCCCGAAAGTACGCTAGGGTGAAGGATCTTCTGACCATGAACGAG
GAGTTGAAAAAGGCACGAAAGGCCTTCGATGAGATCAAGTATGTGGGCAC
CGAAGGCAAGCTCAAAGCAAGCTTTCTAGACCAT

FMO05407.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
Taf13-RA 628 CG10756-RA 82..489 9..416 2025 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:23:43
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 20093317..20093660 397..54 1705 99.7 Minus
2L 23513712 2L 20093724..20093768 53..9 225 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:23:44 has no hits.

FMO05407.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:21:36 Download gff for FMO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 75..496 1..422 98   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:49 Download gff for FMO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 72..493 1..422 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:10:34 Download gff for FMO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf13-RA 75..496 1..422 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:10:34 Download gff for FMO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 20093318..20093660 54..396 99 <- Minus
2L 20093724..20093774 1..53 92   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:21:36 Download gff for FMO05407.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 20093318..20093660 54..396 99 <- Minus
arm_2L 20093724..20093774 1..53 92   Minus