FMO05411.5prime Sequence
491 bp (491 high quality bases) assembled on 2008-08-25
> FMO05411.5prime
CAGTCGACATGACAGCCACGGGCAGAAAGAAGCTGGACGAGCTTTACCAT
CCGGTAACGGATCGGTCCGAGTTCTATGGCATGCAGGACTTCGCCAAGCC
GCCGGTGCTATTCTCGCCCGCCGAGGACATGGAGAAGAGCTTCTACGGCC
ATGAGACTGACTCGCCGGACCTGAAGGGGGCCTCACCGTTCCTGCTCCAC
GGCCAGAAGGTGGCCACGCCGACGCTCAAGTTCCACAACCATTTTCCGCC
CGACATGCAGACCGATAAGAAGGATCACATACTGGACCAGAACATGTTGA
CCAGCACACCCCTGACCGACTTTGGTCCGCCGATGAAGCGCGGCAGGATG
ACGCCGCCGACCTCGGAACGCGTGATGCTGTACGTGCGGCAGGAGAACGA
GGAGGTGTATACACCGTTGCACGTGGTGCCGCCCACCACGATCGGCCTGC
TAAATGCGGATTACTGCGAAAATGCAAGCTTTCTAGACCAT
FMO05411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
grh-RO | 3094 | CG42311-RO | 1799..2248 | 9..458 | 2250 | 100 | Plus |
grh-RL | 6692 | CG42311-RL | 4105..4554 | 9..458 | 2250 | 100 | Plus |
grh-RH | 3972 | CG42311-RH | 3295..3744 | 9..458 | 2250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17839594..17839790 | 263..459 | 985 | 100 | Plus |
2R | 25286936 | 2R | 17839093..17839221 | 9..137 | 645 | 100 | Plus |
2R | 25286936 | 2R | 17839313..17839439 | 136..262 | 635 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:33:56 has no hits.
FMO05411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:03 Download gff for
FMO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 9..455 | 100 | -> | Plus |
grh-RH | 3808..3824 | 456..473 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:39 Download gff for
FMO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RE | 447..911 | 9..473 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:53 Download gff for
FMO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
grh-RH | 3295..3741 | 9..455 | 100 | -> | Plus |
grh-RH | 3808..3824 | 456..473 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:53 Download gff for
FMO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17839093..17839221 | 9..137 | 100 | -> | Plus |
2R | 17839315..17839439 | 138..262 | 100 | -> | Plus |
2R | 17839594..17839789 | 263..458 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:03 Download gff for
FMO05411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13726598..13726726 | 9..137 | 100 | -> | Plus |
arm_2R | 13726820..13726944 | 138..262 | 100 | -> | Plus |
arm_2R | 13727099..13727294 | 263..458 | 100 | -> | Plus |