Clone FMO05413 Report

Search the DGRC for FMO05413

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:54
Well:13
Vector:pMK33-CFH-BD
Associated Gene/TranscriptTaf10-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO05413.5prime Sequence

527 bp (527 high quality bases) assembled on 2008-08-25

> FMO05413.5prime
CAGTCGACATGGCTTCCGATGGCGAGGACATCAGTGTTACACCCGCAGAA
TCCGTAACATCGGCCACGGACACCGAGGAGGAGGATATAGACTCGCCACT
AATGCAGTCCGAACTGCATTCCGACGAGGAGCAACCGGACGTGGAGGAGG
TTCCTCTGACGACGGAGGAATCGGAGATGGATGAGCTGATAAAGCAGCTG
GAGGACTACTCGCCCACCATACCAGACGCCCTCACCATGCACATCTTGAA
AACGGCTGGCTTCTGCACAGTGGACCCCAAGATAGTGCGCCTCGTCTCGG
TGTCCGCGCAGAAGTTCATCTCGGATATTGCCAACGACGCACTGCAGCAC
TGCAAGACGCGCACCACGAACATCCAGCATTCCAGCGGACACAGTTCCAG
CAAGGACAAGAAAAACCCCAAGGACAGGAAGTACACGCTGGCCATGGAGG
ACCTGGTGCCGGCACTCGCGGACCACGGCATCACCATGCGCAAGCCGCAG
TATTTCGTTGCAAGCTTTCTAGACCAT

FMO05413.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:17
Subject Length Description Subject Range Query Range Score Percent Strand
Taf10-RA 664 CG2859-RA 92..592 9..509 2505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 2768285..2768540 254..509 1280 100 Plus
2L 23513712 2L 2767981..2768227 9..255 1235 100 Plus
Blast to na_te.dros performed 2014-11-28 19:48:15
Subject Length Description Subject Range Query Range Score Percent Strand
invader3 5484 invader3 INVADER3 5484bp 4126..4175 89..138 106 68 Plus

FMO05413.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:53 Download gff for FMO05413.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..599 9..518 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:58 Download gff for FMO05413.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 70..577 9..518 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:46 Download gff for FMO05413.5prime
Subject Subject Range Query Range Percent Splice Strand
Taf10-RA 92..599 9..518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:46 Download gff for FMO05413.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 2768286..2768547 255..518 98   Plus
2L 2767981..2768226 9..254 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:53 Download gff for FMO05413.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 2767981..2768226 9..254 100 -> Plus
arm_2L 2768286..2768547 255..518 98   Plus