FMO05422.5prime Sequence
677 bp (677 high quality bases) assembled on 2008-08-25
> FMO05422.5prime
CAGTCGACATGGATAAGATGACGGTTGCCCAGAAGAACGCATATCTCGAG
GCGCACATGGCGGTGCAGCAGCAGATGGCCCAGGCGGCCATTCAGTTCAA
GCAGCAGCAGACGTCCCAGCAACAGAACTCCCCCACGGCCAACAACAACA
ACAACAGCCAGAACAATGGCAACATGCAGCAGCAACAGCAGCAGCAGCAG
CAGCAACAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCATTATGCAGC
AACCATCAAGGTGCCGCAGATCAGTTCCTCCAATGTGGCAGCCGCGGCGG
CGGGGGAGAGCACCTTCACAGTTCCGGACGACGGAATGGGATTCGAAGGA
GGCGTGCGGGTCCTGCAGAGTCTGGGAACCTGGTCGGCGGCCGAGCAACT
GACCTACAACATCCCCAAGCCCAACCTCATCCCCTTCACAGAGCCCTATG
TCGAGGGGGGCTCCATGCACCCCGCCAGTCGACTCAAGGCCCTGCAACAG
GTGCAACAGGCATCCTCCGGGGTGCGCAAGACAAATCCCTCAAAGTCCAC
CAACAAGGCATTCGAGTGCACGGTCTGCGGCAAAGGACTCGCCCGCAAGG
ACAAGCTGACCATCCACATGCGCATCCACACCGGCGAGAAGCCCTATATT
TGTGAAGTAGCAAGCTTTCTAGACCAT
FMO05422.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:25:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12071-RE | 2640 | CG12071-RE | 279..930 | 7..658 | 3260 | 100 | Plus |
| CG12071-RD | 2155 | CG12071-RD | 279..930 | 7..658 | 3260 | 100 | Plus |
| CG12071-RG | 2155 | CG12071-RG | 279..930 | 7..658 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:25:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30879354..30879893 | 546..7 | 2700 | 100 | Minus |
| 3R | 32079331 | 3R | 30879130..30879242 | 659..547 | 565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:25:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2347..2510 | 100..269 | 348 | 72.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2649 | 65..253 | 172 | 59.2 | Plus |
FMO05422.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:22:56 Download gff for
FMO05422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12071-RB | 121..784 | 1..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-02 16:29:53 Download gff for
FMO05422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12071-RA | 121..785 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:11:31 Download gff for
FMO05422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12071-RG | 273..936 | 1..663 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:11:31 Download gff for
FMO05422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30879124..30879242 | 547..666 | 98 | <- | Minus |
| 3R | 30879354..30879898 | 1..546 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:22:56 Download gff for
FMO05422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26704846..26704964 | 547..666 | 98 | <- | Minus |
| arm_3R | 26705076..26705620 | 1..546 | 99 | | Minus |
